RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1087264" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA1087264 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4845535 4845535 PRJNA1087264_P_NODE_8064_length_222_cov_1.179191_g7982_i0 PRJNA1087264 8064 222 1.179191 2.61780402 Trichomonas 5721 Parabasalia other_Eukaryota 87.9 5.4e-13   NTclustered gi|40060517|gb|AY371181.1| 5722 g7982 i0 98 0.635135135135135 50 1 23 0 53 102 2495 2544 Trichomonas vaginalis TVGCN20 (gcn20) pseudogene, partial sequence; and papain-like cysteine proteinase (cp2.5.1.1) gene, complete cds blastn 141 87.9 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
27352229 27352229 PRJNA1087264_P_NODE_15743_length_166_cov_0.871795_g15661_i0 PRJNA1087264 15743 166 0.871795 1.4471797 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 41.2 0.0459   NR XP_001581855.1 412133 g15661 i0 65.4 0.469879518072289 26 9 47 0 82 5 123 148 XP_001581855.1 hypothetical protein TVAGG3_0565230 [Trichomonas vaginalis G3] diamond 78 41.2 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
28804187 28804187 PRJNA1087264_P_NODE_19548_length_163_cov_0.894737_g19466_i0 PRJNA1087264 19548 163 0.894737 1.45842131 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 54.7 7.02e-7   NR XP_067772253.1 135588 g19466 i0 49 1.87730061349693 49 25 90.2 0 16 162 149 197 XP_067772253.1 phosphate translocator protein [Histomonas meleagridis] diamond 306 54.7 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
30952372 30952372 PRJNA1087264_P_NODE_1634_length_527_cov_1.493724_g1555_i0 PRJNA1087264 1634 527 1.493724 7.87192548 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 197 5.27e-61   NR XP_068360038.1 1144522 g1555 i0 57.3 1.94686907020873 171 73 97.3 0 524 12 7 177 XP_068360038.1 40S ribosomal protein S9-1 [Tritrichomonas foetus] diamond 1026 197 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
30952380 30952380 PRJNA1087264_P_NODE_7794_length_225_cov_1.772727_g7712_i0 PRJNA1087264 7794 225 1.772727 3.98863575 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 54.7 8.99e-7   NR XP_001317694.2 412133 g7712 i0 50 2.58666666666667 62 28 78.7 2 13 189 113 174 XP_001317694.2 Golgi to endosome transport [Trichomonas vaginalis G3] diamond 582 54.7 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;