RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

19 rows where bioproject = "PRJNA1087264" and tax_phylum = "Myxococcota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 19 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1087264 · 19 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1468717 1468717 PRJNA1087264_P_NODE_8102_length_222_cov_0.832370_g8020_i0 PRJNA1087264 8102 222 0.83237 1.8478614 root 1 Root_unresolved Root_unresolved 90.9 2.13e-19   NR MBN2515843.1 2026735 g8020 i0 53.4 7.86486486486486 73 34 98.6 0 221 3 139 211 MBN2515843.1 ATPase [Deltaproteobacteria bacterium] diamond 1746 90.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
10397334 10397334 PRJNA1087264_P_NODE_13009_length_175_cov_1.150794_g12927_i0 PRJNA1087264 13009 175 1.150794 2.0138895 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 79 8.97e-16   NR MCW5830127.1 2026735 g12927 i0 66.1 1.95428571428571 56 19 96 0 2 169 182 237 MCW5830127.1 S-methyl-5'-thioadenosine phosphorylase [Deltaproteobacteria bacterium] diamond 342 79 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
18045716 18045716 PRJNA1087264_P_NODE_13135_length_174_cov_1.224000_g13053_i0 PRJNA1087264 13135 174 1.224 2.12976 Myxococcales bacterium 2026763 Bacteria Bacteria 94.7 1.81e-23   NR MBT9558961.1 2026763 g13053 i0 70.2 0.982758620689655 57 17 98.3 0 173 3 40 96 MBT9558961.1 FKBP-type peptidyl-prolyl cis-trans isomerase [Myxococcales bacterium] diamond 171 94.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27288748 27288748 PRJNA1087264_P_NODE_19183_length_163_cov_0.894737_g19101_i0 PRJNA1087264 19183 163 0.894737 1.45842131 Nannocystis sp. 1962667 Bacteria Bacteria 95.1 1.62e-21   NR WP_293275579.1 1962667 g19101 i0 77.8 0.993865030674847 54 12 99.4 0 2 163 281 334 WP_293275579.1 TauD/TfdA family dioxygenase [Nannocystis sp.] diamond 162 95.1 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis sp.
27541550 27541550 PRJNA1087264_P_NODE_13784_length_169_cov_1.275000_g13702_i0 PRJNA1087264 13784 169 1.275 2.15475 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 73.2 4.31e-14   NR MCB9733701.1 2026735 g13702 i0 58.9 1.98816568047337 56 22 99.4 1 1 168 150 204 MCB9733701.1 metallophosphatase domain-containing protein [Deltaproteobacteria bacterium] diamond 336 73.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27983472 27983472 PRJNA1087264_P_NODE_8985_length_210_cov_1.267081_g8903_i0 PRJNA1087264 8985 210 1.267081 2.6608701 Nannocystis sp. 1962667 Bacteria Bacteria 103 1.39e-24   NR HEY0134472.1 1962667 g8903 i0 79.2 0.757142857142857 53 11 75.7 0 50 208 9 61 HEY0134472.1 TauD/TfdA family dioxygenase [Nannocystis sp.] diamond 159 103 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis sp.
28678295 28678295 PRJNA1087264_P_NODE_13687_length_170_cov_1.264463_g13605_i0 PRJNA1087264 13687 170 1.264463 2.1495871 Myxococcaceae bacterium 2484252 Bacteria Bacteria 42.7 0.0139   NR RYZ13579.1 2484252 g13605 i0 46 0.882352941176471 50 23 81.2 1 26 163 3 52 RYZ13579.1 MAG: ABC-F family ATP-binding cassette domain-containing protein, partial [Myxococcaceae bacterium] diamond 150 42.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
29017209 29017209 PRJNA1087264_P_NODE_10048_length_199_cov_1.020000_g9966_i0 PRJNA1087264 10048 199 1.02 2.0298 root 1 Root_unresolved Root_unresolved 49.7 7.54e-5   NR MCX5844579.1 2026735 g9966 i0 43.9 5.1105527638191 57 28 85.9 1 1 171 40 92 MCX5844579.1 PKD domain-containing protein [Deltaproteobacteria bacterium] diamond 1017 50.1 0.992015968063872 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29372794 29372794 PRJNA1087264_P_NODE_8529_length_216_cov_1.221557_g8447_i0 PRJNA1087264 8529 216 1.221557 2.63856312 Myxococcota bacterium 2818507 Bacteria Bacteria 41.2 0.0192   NR MEC8422185.1 2818507 g8447 i0 42.6 0.944444444444444 68 39 94.4 0 214 11 18 85 MEC8422185.1 hypothetical protein [Myxococcota bacterium] diamond 204 41.2 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
29435607 29435607 PRJNA1087264_P_NODE_13670_length_170_cov_1.264463_g13588_i0 PRJNA1087264 13670 170 1.264463 2.1495871 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 57.4 8.22e-8   NR MBL8617423.1 2026735 g13588 i0 48.1 4.78235294117647 54 28 95.3 0 167 6 28 81 MBL8617423.1 metallophosphoesterase [Deltaproteobacteria bacterium] diamond 813 57.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29458600 29458600 PRJNA1087264_P_NODE_19850_length_163_cov_0.894737_g19768_i0 PRJNA1087264 19850 163 0.894737 1.45842131 Pseudomonadati 3379134 Bacteria Bacteria 68.9 6.11e-12   NR RME51914.1 2026735 g19768 i0 64.2 4.87730061349693 53 19 97.5 0 3 161 208 260 RME51914.1 MAG: CocE/NonD family hydrolase, partial [Deltaproteobacteria bacterium] diamond 795 68.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29972711 29972711 PRJNA1087264_P_NODE_6191_length_256_cov_1.183575_g6109_i0 PRJNA1087264 6191 256 1.183575 3.029952 Myxococcota bacterium 2818507 Bacteria Bacteria 74.3 3.32e-13   NR MEE8166805.1 2818507 g6109 i0 44 0.87890625 75 42 87.9 0 256 32 104 178 MEE8166805.1 long-chain-acyl-CoA synthetase [Myxococcota bacterium] diamond 225 74.3 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
31078724 31078724 PRJNA1087264_P_NODE_18075_length_164_cov_0.886957_g17993_i0 PRJNA1087264 18075 164 0.886957 1.45460948 Myxococcota bacterium 2818507 Bacteria Bacteria 73.6 1.69e-13   NR MDQ3266244.1 2818507 g17993 i0 62 0.914634146341463 50 19 91.5 0 3 152 25 74 MDQ3266244.1 DUF4331 domain-containing protein [Myxococcota bacterium] diamond 150 73.6 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
31426321 31426321 PRJNA1087264_P_NODE_16696_length_165_cov_0.879310_g16614_i0 PRJNA1087264 16696 165 0.87931 1.4508615 Polyangiaceae bacterium 2268199 Bacteria Bacteria 72.4 4.4e-13   NR HWZ89664.1 2268199 g16614 i0 57.7 0.945454545454545 52 22 94.5 0 158 3 188 239 HWZ89664.1 hypothetical protein [Polyangiaceae bacterium] diamond 156 72.4 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
31837362 31837362 PRJNA1087264_P_NODE_3637_length_343_cov_2.666667_g3555_i0 PRJNA1087264 3637 343 2.666667 9.14666781 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 43.9 0.0382   NR RME20612.1 2026735 g3555 i0 43.9 0.498542274052478 57 29 49.9 2 215 45 34 87 RME20612.1 MAG: hypothetical protein D6806_16025, partial [Deltaproteobacteria bacterium] diamond 171 43.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31869100 31869100 PRJNA1087264_P_NODE_3657_length_342_cov_1.218430_g3575_i0 PRJNA1087264 3657 342 1.21843 4.1670306 Polyangium jinanense 2829994 Bacteria Bacteria 124 2.24e-30   NR WP_272420606.1 2829994 g3575 i0 55.8 10.359649122807 113 45 94.7 1 327 4 863 975 WP_272420606.1 non-ribosomal peptide synthetase [Polyangium jinanense] diamond 3543 124 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium jinanense
32344041 32344041 PRJNA1087264_P_NODE_3059_length_378_cov_0.808511_g2978_i0 PRJNA1087264 3059 378 0.808511 3.05617158 Kofleriaceae bacterium 2212474 Bacteria Bacteria 100 2.4e-22   NR HEX7703705.1 2212474 g2978 i0 56.4 7.75396825396825 94 38 74.6 2 376 95 140 230 HEX7703705.1 pirin family protein [Kofleriaceae bacterium] diamond 2931 100 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
32556978 32556978 PRJNA1087264_P_NODE_12519_length_178_cov_2.201550_g12437_i0 PRJNA1087264 12519 178 2.20155 3.918759 Bacteria 2 Bacteria Bacteria 107 1.97e-25   NR MBI1947140.1 2026735 g12437 i0 81.4 14.814606741573 59 11 99.4 0 2 178 406 464 MBI1947140.1 NADP-dependent isocitrate dehydrogenase [Deltaproteobacteria bacterium] diamond 2637 108 0.990740740740741 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32817144 32817144 PRJNA1087264_P_NODE_13700_length_170_cov_1.206612_g13618_i0 PRJNA1087264 13700 170 1.206612 2.0512404 Myxococcota bacterium 2818507 Bacteria Bacteria 50.1 3.63e-5   NR MBP7160840.1 2818507 g13618 i0 58.3 1.27058823529412 36 15 63.5 0 164 57 657 692 MBP7160840.1 M6 family metalloprotease domain-containing protein [Myxococcota bacterium] diamond 216 50.1 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;