RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1087264" and tax_kingdom = "Shotokuvirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Shotokuvirae · 3 ✖

bioproject 1

  • PRJNA1087264 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27627796 27627796 PRJNA1087264_P_NODE_4344_length_312_cov_1.114068_g4262_i0 PRJNA1087264 4344 312 1.114068 3.47589216 root 1 Root_unresolved Root_unresolved 97.1 8.159999999999999e-23   NR CAA10165.1 1891767 g4262 i0 92.2 2.44230769230769 51 4 49 0 154 2 83 133 CAA10165.1 large tumor antigen [Betapolyomavirus macacae] diamond 762 97.1 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
28385359 28385359 PRJNA1087264_P_NODE_13066_length_174_cov_1.640000_g12984_i0 PRJNA1087264 13066 174 1.64 2.8536 root 1 Root_unresolved Root_unresolved 80.5 3.94e-17   NR CAA10165.1 1891767 g12984 i0 81.1 3.6551724137931 53 10 91.4 0 16 174 83 135 CAA10165.1 large tumor antigen [Betapolyomavirus macacae] diamond 636 80.5 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
30722323 30722323 PRJNA1087264_P_NODE_12554_length_178_cov_1.364341_g12472_i0 PRJNA1087264 12554 178 1.364341 2.42852698 root 1 Root_unresolved Root_unresolved 77.4 6.48e-16   NR CAA10165.1 1891767 g12472 i0 66 3.57303370786517 53 18 89.3 0 163 5 83 135 CAA10165.1 large tumor antigen [Betapolyomavirus macacae] diamond 636 77.4 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;