RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1087264", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA1087264 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28835957 28835957 PRJNA1087264_P_NODE_7048_length_238_cov_1.322751_g6966_i0 PRJNA1087264 7048 238 1.322751 3.14814738 Arcobacter sp. FWKO B 2593672 Bacteria Bacteria 119 2.12e-29   NR WP_200414904.1 2593672 g6966 i0 67.1 2.98739495798319 79 26 99.6 0 237 1 411 489 WP_200414904.1 phosphoenolpyruvate carboxykinase (ATP) [Arcobacter sp. FWKO B] diamond 711 119 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter sp. FWKO B
32659488 32659488 PRJNA1087264_P_NODE_21120_length_161_cov_0.910714_g21038_i0 PRJNA1087264 21120 161 0.910714 1.46624954 Helicobacter pylori 210 Bacteria Bacteria 68.6 1.53e-13   NR GAA8948737.1 210 g21038 i0 61.5 0.968944099378882 52 20 96.9 0 160 5 1 52 GAA8948737.1 hypothetical protein Kyoto181A_0640 [Helicobacter pylori] diamond 156 68.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;