RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1087264", tax_kingdom = "Pseudomonadati" and tax_phylum = "Aquificota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Aquificota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA1087264 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18045737 18045737 PRJNA1087264_P_NODE_15875_length_166_cov_0.871795_g15793_i0 PRJNA1087264 15875 166 0.871795 1.4471797 Aquificota bacterium 2202151 Bacteria Bacteria 307 2.69e-79   NTclustered gi|2049899551|gb|CP076324.1| 2202151 g15793 i0 100 1 166 0 100 0 1 166 1186137 1186302 MAG: Aquificota bacterium isolate RBS10-58 chromosome, complete genome blastn 166 307 1 Bacteria   Pseudomonadati Aquificota         Aquificota bacterium
31987027 31987027 PRJNA1087264_P_NODE_5078_length_285_cov_2.559322_g4996_i0 PRJNA1087264 5078 285 2.559322 7.2940677 Aquifex 2713 Bacteria Bacteria 128 2.8899999999999996e-32   NR HIO41318.1 313370 g4996 i0 69.6 7.87368421052632 92 28 96.8 0 8 283 443 534 HIO41318.1 ATP citrate synthase [Aquifex sp.] diamond 2244 128 1 Bacteria   Pseudomonadati Aquificota Aquificia Aquificales Aquificaceae Aquifex Aquifex sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;