RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1087264", tax_kingdom = "Fungi" and tax_phylum = "Cryptomycota"

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tax_superkingdom 1

tax_phylum 1

  • Cryptomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1087264 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2744773 2744773 PRJNA1087264_P_NODE_4303_length_313_cov_2.568182_g4221_i0 PRJNA1087264 4303 313 2.568182 8.03840966 Rozella allomycis CSF55 988480 Fungi Fungi 172 1.23e-51   NR EPZ33659.1 988480 g4221 i0 74 12.9584664536741 104 27 99.7 0 2 313 85 188 EPZ33659.1 60S ribosomal protein L8 [Rozella allomycis CSF55] diamond 4056 172 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella allomycis
21419459 21419459 PRJNA1087264_P_NODE_15237_length_166_cov_2.179487_g15155_i0 PRJNA1087264 15237 166 2.179487 3.61794842 Rozella allomycis CSF55 988480 Fungi Fungi 87.4 8.07e-20   NR EPZ37075.1 988480 g15155 i0 81.8 1.98795180722892 55 10 99.4 0 166 2 74 128 EPZ37075.1 60S ribosomal protein L18-2 [Rozella allomycis CSF55] diamond 330 87.4 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella allomycis
27153317 27153317 PRJNA1087264_P_NODE_6362_length_252_cov_1.502463_g6280_i0 PRJNA1087264 6362 252 1.502463 3.78620676 root 1 Root_unresolved Root_unresolved 57.8 2.07e-7   NR EPZ31296.1 988480 g6280 i0 37.3 3.92857142857143 83 52 98.8 0 2 250 530 612 EPZ31296.1 Ribosomal protein S3Ae domain-containing protein [Rozella allomycis CSF55] diamond 990 58.2 0.993127147766323 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella allomycis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;