RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1087264", tax_clade = "Stenosarchaea group" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

tax_clade 1

  • Stenosarchaea group · 3 ✖

bioproject 1

  • PRJNA1087264 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26782865 26782865 PRJNA1087264_P_NODE_11281_length_188_cov_1.100719_g11199_i0 PRJNA1087264 11281 188 1.100719 2.06935172 Methanothrix sp. 90426 Archaea Archaea 47 5.67e-4   NR HRW83283.1 90426 g11199 i0 60.5 1.37234042553191 43 17 68.6 0 27 155 337 379 HRW83283.1 hydroxymethylglutaryl-CoA synthase [Methanothrix sp.] diamond 258 47 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
28290523 28290523 PRJNA1087264_P_NODE_20166_length_162_cov_0.902655_g20084_i0 PRJNA1087264 20166 162 0.902655 1.4623011 Halobacteriales 2235 Archaea Archaea 108 4.53e-26   NR WP_271970566.1 337243 g20084 i0 100 12.7592592592593 53 0 98.1 0 161 3 241 293 WP_271970566.1 polyphosphate kinase 1, partial [Halorubrum ezzemoulense] diamond 2067 108 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum ezzemoulense
29932764 29932764 PRJNA1087264_P_NODE_19371_length_163_cov_0.894737_g19289_i0 PRJNA1087264 19371 163 0.894737 1.45842131 Halobacteriales 2235 Archaea Archaea 78.6 2.49e-16   NR WP_188879025.1 1193105 g19289 i0 66.7 8.92638036809816 54 18 99.4 0 1 162 138 191 WP_188879025.1 (d)CMP kinase [Halarchaeum grantii] diamond 1455 78.6 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halarchaeum Halarchaeum grantii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;