RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1087264", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA1087264 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9121661 9121661 PRJNA1087264_P_NODE_19068_length_163_cov_0.894737_g18986_i0 PRJNA1087264 19068 163 0.894737 1.45842131 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 76.6 1.41e-14   NR HJR36614.1 2448054 g18986 i0 64.2 1.96932515337423 53 19 97.5 0 160 2 393 445 HJR36614.1 NAD-dependent malic enzyme [Gemmatimonadales bacterium] diamond 321 76.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
26592457 26592457 PRJNA1087264_P_NODE_3141_length_373_cov_1.206790_g3060_i0 PRJNA1087264 3141 373 1.20679 4.5013267 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 81.6 2.72e-15   NR HEX4935641.1 2026741 g3060 i0 38.2 0.989276139410188 123 73 98.9 3 373 5 159 278 HEX4935641.1 serpin family protein [Gemmatimonadaceae bacterium] diamond 369 81.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;