RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

33 rows where bioproject = "PRJNA1086823" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Archaea · 33 ✖

bioproject 1

  • PRJNA1086823 · 33 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1468538 1468538 PRJNA1086823_P_NODE_6882_length_312_cov_2.610879_g6765_i0 PRJNA1086823 6882 312 2.610879 8.14594248 Methanobacterium sp. PtaU1.Bin242 1811676 Archaea Archaea 75.1 1.79e-13   NR OPY30658.1 1811676 g6765 i0 72 0.480769230769231 50 14 48.1 0 163 312 174 223 OPY30658.1 MAG: putative sugar kinase [Methanobacterium sp. PtaU1.Bin242] diamond 150 75.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. PtaU1.Bin242
4020249 4020249 PRJNA1086823_P_NODE_12544_length_252_cov_1.927374_g12427_i0 PRJNA1086823 12544 252 1.927374 4.85698248 archaeon 1906665 Archaea Archaea 106 3.7900000000000005e-27   NR RYH30236.1 1906665 g12427 i0 75.3 0.869047619047619 73 13 86.9 1 220 2 54 121 RYH30236.1 MAG: hypothetical protein EON65_05740 [archaeon] diamond 219 106 1 Archaea               archaeon
5296592 5296592 PRJNA1086823_P_NODE_2305_length_498_cov_1.101176_g2188_i0 PRJNA1086823 2305 498 1.101176 5.48385648 uncultured crenarchaeote 29281 Archaea Archaea 713 0   NTclustered gi|22797874|emb|AJ496176.1| 29281 g2188 i0 92.57 135.471887550201 498 35 100 2 1 498 6884 7379 Uncultured crenarchaeote 34 kb genomic fragment blastn 67465 713 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
12947525 12947525 PRJNA1086823_P_NODE_18731_length_243_cov_0.917647_g18614_i0 PRJNA1086823 18731 243 0.917647 2.22988221 Candidatus Nitrosotalea okcheonensis 1903276 Archaea Archaea 252 2.01e-62   NTclustered gi|1279331958|emb|LT841358.1| 1903276 g18614 i0 85.95 40.5514403292181 242 26 99 8 1 240 1284012 1284247 Nitrosotalea sp. CS isolate NCS1 genome assembly, chromosome: 1 blastn 9854 252 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosotaleales Nitrosotaleaceae Nitrosotalea Candidatus Nitrosotalea okcheonensis
13770747 13770747 PRJNA1086823_P_NODE_19491_length_235_cov_3.228395_g19374_i0 PRJNA1086823 19491 235 3.228395 7.58672825 Methanobacterium 2160 Archaea Archaea 340 4.009999999999999e-89   NTclustered gi|584298061|gb|KF882000.1| 483896 g19374 i0 92.797 103.83829787234 236 15 100 2 1 235 1476 1710 Methanobacterium kanagiense strain 169 23S ribosomal RNA gene, partial sequence blastn 24402 340 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium kanagiense
26995419 26995419 PRJNA1086823_P_NODE_1822_length_551_cov_3.046025_g1706_i0 PRJNA1086823 1822 551 3.046025 16.78359775 root 1 Root_unresolved Root_unresolved 129 4.8099999999999996e-32   NR MBS3057616.1 2026736 g1706 i0 43.1 4.18693284936479 153 70 83.3 2 549 91 228 363 MBS3057616.1 transposase [Candidatus Iainarchaeum archaeon] diamond 2307 130 0.992307692307692 Archaea   Nanobdellati Candidatus Iainarchaeota       Candidatus Iainarchaeum Candidatus Iainarchaeum archaeon
27004107 27004107 PRJNA1086823_P_NODE_5702_length_337_cov_1.772727_g5585_i0 PRJNA1086823 5702 337 1.772727 5.97408999 Candidatus Woesearchaeota archaeon 2026803 Archaea Archaea 82 1.88e-15   NR MBS3174582.1 2026803 g5585 i0 35 1.24629080118694 140 56 93.5 2 1 315 337 476 MBS3174582.1 IMP dehydrogenase [Candidatus Woesearchaeota archaeon] diamond 420 82 1 Archaea   Nanobdellati Candidatus Woesearchaeota         Candidatus Woesearchaeota archaeon
27375373 27375373 PRJNA1086823_P_NODE_17443_length_245_cov_0.906977_g17326_i0 PRJNA1086823 17443 245 0.906977 2.22209365 Methanosarcina 2207 Archaea Archaea 132 4.279999999999999e-34   NR WP_048036455.1 2209 g17326 i0 75.3 6.94285714285714 81 20 99.2 0 244 2 393 473 WP_048036455.1 HsdM family class I SAM-dependent methyltransferase [Methanosarcina mazei] diamond 1701 132 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei
27383682 27383682 PRJNA1086823_P_NODE_1583_length_592_cov_1.159923_g1468_i0 PRJNA1086823 1583 592 1.159923 6.86674416 Candidatus Pacearchaeota archaeon 2026773 Archaea Archaea 57.8 2.13e-6   NR MCK9567352.1 2026773 g1468 i0 34.2 0.5625 79 52 40 0 354 590 3 81 MCK9567352.1 hypothetical protein [Candidatus Pacearchaeota archaeon] diamond 333 57.8 1 Archaea Candidatus Pacearchaeota Nanobdellati           Candidatus Pacearchaeota archaeon
27478308 27478308 PRJNA1086823_P_NODE_4863_length_360_cov_1.320557_g4746_i0 PRJNA1086823 4863 360 1.320557 4.7540052 Candidatus Pacearchaeota archaeon 2026773 Archaea Archaea 114 1.11e-26   NR MCK9567655.1 2026773 g4746 i0 61.6 0.716666666666667 86 33 71.7 0 266 9 35 120 MCK9567655.1 nucleotidyltransferase domain-containing protein [Candidatus Pacearchaeota archaeon] diamond 258 114 1 Archaea Candidatus Pacearchaeota Nanobdellati           Candidatus Pacearchaeota archaeon
27731210 27731210 PRJNA1086823_P_NODE_5364_length_346_cov_1.021978_g5247_i0 PRJNA1086823 5364 346 1.021978 3.53604388 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 74.7 4.24e-13   NR HET8792660.1 2169593 g5247 i0 36.9 0.728323699421965 84 52 72.8 1 255 4 119 201 HET8792660.1 DnaJ C-terminal domain-containing protein [Nitrososphaeraceae archaeon] diamond 252 74.7 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon
27888661 27888661 PRJNA1086823_P_NODE_3585_length_410_cov_1.246291_g3468_i0 PRJNA1086823 3585 410 1.246291 5.1097931 Thermoproteota archaeon 2056631 Archaea Archaea 53.9 2.49e-6   NR NLE06965.1 2056631 g3468 i0 39.3 0.446341463414634 61 25 37.3 2 409 257 13 71 NLE06965.1 hypothetical protein [Thermoproteota archaeon] diamond 183 53.9 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
27920281 27920281 PRJNA1086823_P_NODE_13185_length_251_cov_1.741573_g13068_i0 PRJNA1086823 13185 251 1.741573 4.37134823 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 67.8 4.51e-11   NR HET8792660.1 2169593 g13068 i0 54.4 0.812749003984064 68 30 81.3 1 250 47 245 311 HET8792660.1 DnaJ C-terminal domain-containing protein [Nitrososphaeraceae archaeon] diamond 204 67.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon
28353789 28353789 PRJNA1086823_P_NODE_8686_length_285_cov_3.273585_g8569_i0 PRJNA1086823 8686 285 3.273585 9.32971725 Stenosarchaea group 2290931 Archaea Archaea 74.7 3.03e-13   NR CAD6492031.1 2608793 g8569 i0 56.4 5.45263157894737 55 24 57.9 0 118 282 281 335 CAD6492031.1 MAG: putative transposase [Candidatus Argoarchaeum ethanivorans] diamond 1554 74.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales   Candidatus Argoarchaeum Candidatus Argoarchaeum ethanivorans
29048581 29048581 PRJNA1086823_P_NODE_3348_length_422_cov_1.564470_g3231_i0 PRJNA1086823 3348 422 1.56447 6.6020634 root 1 Root_unresolved Root_unresolved 84.3 5.5e-16   NR MEK6881475.1 2026764 g3231 i0 36.9 1.88388625592417 141 86 98.1 1 419 6 167 307 MEK6881475.1 hypothetical protein [Nanoarchaeota archaeon] diamond 795 85.1 0.990599294947121 Archaea   Nanobdellati Nanobdellota         Nanobdellota archaeon
29206522 29206522 PRJNA1086823_P_NODE_4129_length_384_cov_2.163987_g4012_i0 PRJNA1086823 4129 384 2.163987 8.30971008 root 1 Root_unresolved Root_unresolved 64.7 3.67e-9   NR MCK9567690.1 2026773 g4012 i0 50.8 1.8671875 59 28 46.1 1 191 15 1 58 MCK9567690.1 SMC family ATPase [Candidatus Pacearchaeota archaeon] diamond 717 65.1 0.993855606758833 Archaea Candidatus Pacearchaeota Nanobdellati           Candidatus Pacearchaeota archaeon
29341283 29341283 PRJNA1086823_P_NODE_4669_length_366_cov_1.064846_g4552_i0 PRJNA1086823 4669 366 1.064846 3.89733636 Methanobacteriota archaeon 2026739 Archaea Archaea 82.4 2.08e-16   NR RMG30150.1 2026739 g4552 i0 39.7 0.991803278688525 121 68 99.2 3 4 366 97 212 RMG30150.1 MAG: aquaporin [Methanobacteriota archaeon] diamond 363 82.4 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
29624865 29624865 PRJNA1086823_P_NODE_13550_length_251_cov_0.876404_g13433_i0 PRJNA1086823 13550 251 0.876404 2.19977404 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 181 8.81e-51   NR HZA43334.1 2169593 g13433 i0 96.4 0.99203187250996006 83 3 99.2 0 250 2 124 206 HZA43334.1 isoleucine--tRNA ligase [Nitrososphaeraceae archaeon] diamond 249 181 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon
30035965 30035965 PRJNA1086823_P_NODE_10611_length_267_cov_0.804124_g10494_i0 PRJNA1086823 10611 267 0.804124 2.14701108 Candidatus Micrarchaeota archaeon 2250274 Archaea Archaea 73.2 1.05e-13   NR MDE1833823.1 2250274 g10494 i0 41.6 1 89 49 100 2 267 1 94 179 MDE1833823.1 hypothetical protein [Candidatus Micrarchaeota archaeon] diamond 267 73.2 1 Archaea   Nanobdellati Candidatus Micrarchaeota         Candidatus Micrarchaeota archaeon
30067435 30067435 PRJNA1086823_P_NODE_5532_length_341_cov_8.488806_g5415_i0 PRJNA1086823 5532 341 8.488806 28.94682846 archaeon 1906665 Archaea Archaea 102 2.49e-24   NR MCQ2818700.1 1906665 g5415 i0 52.9 0.897360703812317 102 32 85.3 2 3 293 142 232 MCQ2818700.1 30S ribosomal protein S3 [archaeon] diamond 306 102 1 Archaea               archaeon
30225430 30225430 PRJNA1086823_P_NODE_15312_length_248_cov_0.891429_g15195_i0 PRJNA1086823 15312 248 0.891429 2.21074392 Methanomassiliicoccales archaeon 1906667 Archaea Archaea 77 1.25e-14   NR TET89590.1 1906667 g15195 i0 44.3 0.955645161290323 79 44 95.6 0 8 244 87 165 TET89590.1 MAG: EVE domain-containing protein [Methanomassiliicoccales archaeon] diamond 237 77 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales     Methanomassiliicoccales archaeon
30501289 30501289 PRJNA1086823_P_NODE_6873_length_312_cov_3.205021_g6756_i0 PRJNA1086823 6873 312 3.205021 9.99966552 Methanobacterium 2160 Archaea Archaea 104 3.6300000000000006e-27   NR OPY19862.1 1811675 g6756 i0 100 0.942307692307692 49 0 47.1 0 310 164 19 67 OPY19862.1 MAG: Protein ArsC [Methanobacterium sp. PtaU1.Bin097] diamond 294 104 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. PtaU1.Bin097
30731002 30731002 PRJNA1086823_P_NODE_4414_length_374_cov_1.196013_g4297_i0 PRJNA1086823 4414 374 1.196013 4.47308862 Nitrosarchaeum sp. 2026886 Archaea Archaea 90.1 3.37e-19   NR MDW7640929.1 2026886 g4297 i0 43.6 0.810160427807487 101 54 78.6 2 295 2 104 204 MDW7640929.1 hypothetical protein [Nitrosarchaeum sp.] diamond 303 90.1 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosarchaeum Nitrosarchaeum sp.
31236443 31236443 PRJNA1086823_P_NODE_1495_length_608_cov_7.383178_g1381_i0 PRJNA1086823 1495 608 7.383178 44.88972224 archaeon 1906665 Archaea Archaea 278 2.8899999999999995e-92   NR MCQ2821492.1 1906665 g1381 i0 71.5 2.96546052631579 200 57 98.7 0 604 5 1 200 MCQ2821492.1 50S ribosomal protein L15e [archaeon] diamond 1803 278 1 Archaea               archaeon
31805885 31805885 PRJNA1086823_P_NODE_16797_length_246_cov_0.901734_g16680_i0 PRJNA1086823 16797 246 0.901734 2.21826564 archaeon 1906665 Archaea Archaea 46.6 0.0017   NR RYH26683.1 1906665 g16680 i0 44.6 0.682926829268293 56 30 68.3 1 2 169 703 757 RYH26683.1 MAG: hypothetical protein EON65_14255 [archaeon] diamond 168 46.6 1 Archaea               archaeon
32058972 32058972 PRJNA1086823_P_NODE_8098_length_291_cov_2.922018_g7981_i0 PRJNA1086823 8098 291 2.922018 8.50307238 Candidatus Pacearchaeota archaeon 2026773 Archaea Archaea 100 4.66e-22   NR MAG24282.1 2026773 g7981 i0 49.5 1.04123711340206 101 46 99 1 2 289 1333 1433 MAG24282.1 hypothetical protein [Candidatus Pacearchaeota archaeon] diamond 303 100 1 Archaea Candidatus Pacearchaeota Nanobdellati           Candidatus Pacearchaeota archaeon
32208666 32208666 PRJNA1086823_P_NODE_6878_length_312_cov_2.849372_g6761_i0 PRJNA1086823 6878 312 2.849372 8.89004064 Methanobacterium 2160 Archaea Archaea 99.4 2.4699999999999994e-23   NR HEY0196299.1 2164 g6761 i0 87.3 5.28846153846154 55 7 52.9 0 146 310 14 68 HEY0196299.1 PadR family transcriptional regulator [Methanobacterium sp.] diamond 1650 99.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
32280733 32280733 PRJNA1086823_P_NODE_4599_length_367_cov_3.166667_g4482_i0 PRJNA1086823 4599 367 3.166667 11.62166789 Methanocaldococcus villosus 667126 Archaea Archaea 97.1 8.449999999999999e-23   NR WP_004592618.1 667126 g4482 i0 42.6 1.88010899182561 115 48 94 2 367 23 44 140 WP_004592618.1 30S ribosomal protein S19e [Methanocaldococcus villosus] diamond 690 97.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus villosus
32533835 32533835 PRJNA1086823_P_NODE_3059_length_437_cov_1.568681_g2942_i0 PRJNA1086823 3059 437 1.568681 6.85513597 Candidatus Pacearchaeota archaeon 2026773 Archaea Archaea 189 4.74e-53   NR MCK9567781.1 2026773 g2942 i0 64.1 1.9908466819222 145 52 99.5 0 3 437 562 706 MCK9567781.1 hypothetical protein [Candidatus Pacearchaeota archaeon] diamond 870 189 1 Archaea Candidatus Pacearchaeota Nanobdellati           Candidatus Pacearchaeota archaeon
32628094 32628094 PRJNA1086823_P_NODE_6880_length_312_cov_2.640167_g6763_i0 PRJNA1086823 6880 312 2.640167 8.23732104 Thermoproteota archaeon 2056631 Archaea Archaea 90.9 8.290000000000001e-21   NR NLE06972.1 2056631 g6763 i0 100 0.471153846153846 49 0 47.1 0 312 166 92 140 NLE06972.1 hypothetical protein [Thermoproteota archaeon] diamond 147 90.9 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
32659475 32659475 PRJNA1086823_P_NODE_3840_length_397_cov_2.194444_g3723_i0 PRJNA1086823 3840 397 2.194444 8.71194268 Candidatus Aenigmatarchaeota archaeon 3121606 Archaea Archaea 44.7 0.0418   NR MEM5791058.1 3121606 g3723 i0 37.5 0.604534005037783 80 44 55.9 2 342 121 372 451 MEM5791058.1 peptide chain release factor aRF-1 [Candidatus Aenigmatarchaeota archaeon] diamond 240 44.7 1 Archaea   Nanobdellati Candidatus Aenigmatarchaeota         Candidatus Aenigmatarchaeota archaeon
32691084 32691084 PRJNA1086823_P_NODE_9600_length_276_cov_1.921182_g9483_i0 PRJNA1086823 9600 276 1.921182 5.30246232 Candidatus Pacearchaeota archaeon 2026773 Archaea Archaea 48.9 3.63e-4   NR MCK9567746.1 2026773 g9483 i0 36.8 0.945652173913043 87 48 87 2 242 3 62 148 MCK9567746.1 hypothetical protein [Candidatus Pacearchaeota archaeon] diamond 261 48.9 1 Archaea Candidatus Pacearchaeota Nanobdellati           Candidatus Pacearchaeota archaeon
32817139 32817139 PRJNA1086823_P_NODE_16740_length_246_cov_0.901734_g16623_i0 PRJNA1086823 16740 246 0.901734 2.21826564 archaeon 1906665 Archaea Archaea 92 5.34e-22   NR RYG67591.1 1906665 g16623 i0 71.9 0.780487804878049 64 18 78 0 54 245 2 65 RYG67591.1 MAG: 50S ribosomal protein L23 [archaeon] diamond 192 92 1 Archaea               archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;