RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1086823" and tax_phylum = "Ignavibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1086823 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26687627 26687627 PRJNA1086823_P_NODE_9501_length_277_cov_1.627451_g9384_i0 PRJNA1086823 9501 277 1.627451 4.50803927 Ignavibacteria bacterium 2053306 Bacteria Bacteria 48.5 9.4e-5   NR HED37464.1 2053306 g9384 i0 75 0.259927797833935 24 6 26 0 2 73 13 36 HED37464.1 hypothetical protein [Ignavibacteria bacterium] diamond 72 48.5 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
28804174 28804174 PRJNA1086823_P_NODE_18568_length_243_cov_0.917647_g18451_i0 PRJNA1086823 18568 243 0.917647 2.22988221 Ignavibacteria bacterium 2053306 Bacteria Bacteria 130 4.26e-33   NR MFA5404473.1 2053306 g18451 i0 81 1.93827160493827 79 15 97.5 0 3 239 367 445 MFA5404473.1 DUF4153 domain-containing protein [Ignavibacteria bacterium] diamond 471 130 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
28835947 28835947 PRJNA1086823_P_NODE_7368_length_303_cov_2.000000_g7251_i0 PRJNA1086823 7368 303 2 6.06 Melioribacteraceae bacterium 2614255 Bacteria Bacteria 97.4 1.2699999999999999e-23   NR MCK9280319.1 2614255 g7251 i0 55.6 1.6039603960396 81 36 80.2 0 18 260 27 107 MCK9280319.1 HNH endonuclease [Melioribacteraceae bacterium] diamond 486 97.4 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Melioribacteraceae   Melioribacteraceae bacterium
32027414 32027414 PRJNA1086823_P_NODE_15378_length_248_cov_0.891429_g15261_i0 PRJNA1086823 15378 248 0.891429 2.21074392 Ignavibacteria bacterium 2053306 Bacteria Bacteria 59.7 5.24e-9   NR MBM4168621.1 2053306 g15261 i0 47.3 0.895161290322581 74 39 89.5 0 25 246 3 76 MBM4168621.1 hypothetical protein [Ignavibacteria bacterium] diamond 222 59.7 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;