RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1086823" and tax_phylum = "Armatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1086823 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1468283 1468283 PRJNA1086823_P_NODE_11902_length_254_cov_1.337017_g11785_i0 PRJNA1086823 11902 254 1.337017 3.39602318 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 231 2.7599999999999996e-56   NTclustered gi|2874254000|emb|OY970325.1| 157466 g11785 i0 86.301 126.129921259843 219 22 84 8 1 214 1304574 1304789 MAG: uncultured Armatimonadetes bacterium isolate MFD05942.bin.1.84 genome assembly, chromosome: 1 blastn 32037 231 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
30098953 30098953 PRJNA1086823_P_NODE_14932_length_249_cov_0.886364_g14815_i0 PRJNA1086823 14932 249 0.886364 2.20704636 Armatimonadota bacterium 2033014 Bacteria Bacteria 50.8 5.51e-5   NR MER3462695.1 2033014 g14815 i0 41.9 0.891566265060241 74 41 86.7 1 249 34 301 374 MER3462695.1 hypothetical protein [Armatimonadota bacterium] diamond 222 50.8 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
31995773 31995773 PRJNA1086823_P_NODE_14858_length_249_cov_0.886364_g14741_i0 PRJNA1086823 14858 249 0.886364 2.20704636 Armatimonadota bacterium 2033014 Bacteria Bacteria 146 1.0299999999999999e-40   NR MBC7804974.1 2033014 g14741 i0 93.9 0.987951807228916 82 5 98.8 0 248 3 173 254 MBC7804974.1 ParB/RepB/Spo0J family partition protein [Armatimonadota bacterium] diamond 246 146 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;