RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1086823", tax_kingdom = "Thermotogati" and tax_phylum = "Thermotogota"

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tax_superkingdom 1

tax_phylum 1

  • Thermotogota · 5 ✖

tax_kingdom 1

  • Thermotogati · 5 ✖

bioproject 1

  • PRJNA1086823 · 5 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7846546 7846546 PRJNA1086823_P_NODE_5267_length_348_cov_1.134545_g5150_i0 PRJNA1086823 5267 348 1.134545 3.9482166 Defluviitoga tunisiensis 1006576 Bacteria Bacteria 263 1.4e-65   NTclustered gi|762219508|emb|LN824141.1| 1006576 g5150 i0 98.649 5.52873563218391 148 2 43 0 201 348 42647 42794 Defluviitoga tunisiensis genome assembly DTL3, chromosome : I blastn 1924 263 1 Bacteria   Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Defluviitoga Defluviitoga tunisiensis
12947414 12947414 PRJNA1086823_P_NODE_13691_length_251_cov_0.876404_g13574_i0 PRJNA1086823 13691 251 0.876404 2.19977404 Defluviitoga tunisiensis 1006576 Bacteria Bacteria 383 7.099999999999999e-102   NTclustered gi|762219508|emb|LN824141.1| 1006576 g13574 i0 94.378 0.99203187250996006 249 14 99 0 3 251 1922196 1922444 Defluviitoga tunisiensis genome assembly DTL3, chromosome : I blastn 249 383 1 Bacteria   Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Defluviitoga Defluviitoga tunisiensis
18045484 18045484 PRJNA1086823_P_NODE_16735_length_246_cov_0.901734_g16618_i0 PRJNA1086823 16735 246 0.901734 2.21826564 Defluviitoga tunisiensis 1006576 Bacteria Bacteria 455 1.4500000000000002e-123   NTclustered gi|762219508|emb|LN824141.1| 1006576 g16618 i0 100 1 246 0 100 0 1 246 520763 520518 Defluviitoga tunisiensis genome assembly DTL3, chromosome : I blastn 246 455 1 Bacteria   Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Defluviitoga Defluviitoga tunisiensis
20594863 20594863 PRJNA1086823_P_NODE_18657_length_243_cov_0.917647_g18540_i0 PRJNA1086823 18657 243 0.917647 2.22988221 Defluviitoga tunisiensis 1006576 Bacteria Bacteria 449 6.65e-122   NTclustered gi|762219508|emb|LN824141.1| 1006576 g18540 i0 100 1 243 0 100 0 1 243 1623780 1623538 Defluviitoga tunisiensis genome assembly DTL3, chromosome : I blastn 243 449 1 Bacteria   Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Defluviitoga Defluviitoga tunisiensis
23145863 23145863 PRJNA1086823_P_NODE_12699_length_252_cov_0.871508_g12582_i0 PRJNA1086823 12699 252 0.871508 2.19620016 Defluviitoga tunisiensis 1006576 Bacteria Bacteria 333 7.289999999999999e-87   NTclustered gi|762219508|emb|LN824141.1| 1006576 g12582 i0 90.476 1 252 24 100 0 1 252 971998 972249 Defluviitoga tunisiensis genome assembly DTL3, chromosome : I blastn 252 333 1 Bacteria   Thermotogati Thermotogota Thermotogae Petrotogales Petrotogaceae Defluviitoga Defluviitoga tunisiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;