contig_metadata
8 rows where bioproject = "PRJNA1086823", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11220843 | 11220843 | PRJNA1086823_P_NODE_8049_length_292_cov_1.406393_g7932_i0 | PRJNA1086823 | 8049 | 292 | 1.406393 | 4.10666756 | Bacteria | 2 | Bacteria | Bacteria | 534 | 2.1999999999999998e-147 | NTclustered | gi|2323013626|gb|CP109619.1| | 158 | g7932 | i0 | 99.658 | 113.948630136986 | 292 | 1 | 100 | 0 | 1 | 292 | 317081 | 317372 | Treponema denticola strain KCOM 3500 chromosome, complete genome | blastn | 33273 | 534 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema denticola | ||
| 26718941 | 26718941 | PRJNA1086823_P_NODE_6941_length_311_cov_3.710084_g6824_i0 | PRJNA1086823 | 6941 | 311 | 3.710084 | 11.53836124 | Spirochaetes bacterium ADurb.Bin218 | 1852906 | Bacteria | Bacteria | 76.3 | 3.22e-14 | NR | OQA94110.1 | 1852906 | g6824 | i0 | 55.4 | 0.540192926045016 | 56 | 25 | 54 | 0 | 141 | 308 | 68 | 123 | OQA94110.1 MAG: DNA primase [Spirochaetes bacterium ADurb.Bin218] | diamond | 168 | 76.3 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetes bacterium ADurb.Bin218 | ||||||
| 27888662 | 27888662 | PRJNA1086823_P_NODE_6485_length_320_cov_2.226721_g6368_i0 | PRJNA1086823 | 6485 | 320 | 2.226721 | 7.1255072 | Spirochaetia bacterium | 2053615 | Bacteria | Bacteria | 85.1 | 4.8e-18 | NR | NBU99643.1 | 2053615 | g6368 | i0 | 48.9 | 0.8625 | 92 | 38 | 77.8 | 2 | 6 | 254 | 87 | 178 | NBU99643.1 hypothetical protein [Spirochaetia bacterium] | diamond | 276 | 85.1 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetia bacterium | |||||
| 28046609 | 28046609 | PRJNA1086823_P_NODE_3065_length_436_cov_2.677686_g2948_i0 | PRJNA1086823 | 3065 | 436 | 2.677686 | 11.67471096 | Spirochaetota bacterium | 2202144 | Bacteria | Bacteria | 119 | 3.42e-31 | NR | HNR90762.1 | 2202144 | g2948 | i0 | 47.9 | 0.832568807339449 | 121 | 61 | 83.3 | 1 | 395 | 33 | 4 | 122 | HNR90762.1 hypothetical protein [Spirochaetota bacterium] | diamond | 363 | 119 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetota bacterium | ||||||
| 31078713 | 31078713 | PRJNA1086823_P_NODE_12095_length_253_cov_0.866667_g11978_i0 | PRJNA1086823 | 12095 | 253 | 0.866667 | 2.19266751 | Spirochaetales bacterium | 2026792 | Bacteria | Bacteria | 43.5 | 0.0223 | NR | MBE7440161.1 | 2026792 | g11978 | i0 | 35.8 | 0.960474308300395 | 81 | 49 | 94.9 | 2 | 250 | 11 | 190 | 268 | MBE7440161.1 dihydrolipoyl dehydrogenase [Spirochaetales bacterium] | diamond | 243 | 43.5 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetales bacterium | ||||
| 31299795 | 31299795 | PRJNA1086823_P_NODE_16835_length_245_cov_2.180233_g16718_i0 | PRJNA1086823 | 16835 | 245 | 2.180233 | 5.34157085 | Spirochaetia bacterium | 2053615 | Bacteria | Bacteria | 51.6 | 3.34e-6 | NR | NBU98508.1 | 2053615 | g16718 | i0 | 77.8 | 0.661224489795918 | 27 | 6 | 33.1 | 0 | 2 | 82 | 75 | 101 | NBU98508.1 hypothetical protein [Spirochaetia bacterium] | diamond | 162 | 51.6 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetia bacterium | |||||
| 31900817 | 31900817 | PRJNA1086823_P_NODE_7377_length_303_cov_1.556522_g7260_i0 | PRJNA1086823 | 7377 | 303 | 1.556522 | 4.71626166 | Spirochaetia bacterium | 2053615 | Bacteria | Bacteria | 48.9 | 6.38e-5 | NR | NBU99834.1 | 2053615 | g7260 | i0 | 65.7 | 0.693069306930693 | 35 | 12 | 34.7 | 0 | 105 | 1 | 2 | 36 | NBU99834.1 hypothetical protein [Spirochaetia bacterium] | diamond | 210 | 48.9 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetia bacterium | |||||
| 32280731 | 32280731 | PRJNA1086823_P_NODE_18919_length_242_cov_0.923077_g18802_i0 | PRJNA1086823 | 18919 | 242 | 0.923077 | 2.23384634 | Spirochaetota bacterium | 2202144 | Bacteria | Bacteria | 119 | 2.76e-29 | NR | MBN1531750.1 | 2202144 | g18802 | i0 | 76.6 | 0.954545454545455 | 77 | 18 | 95.5 | 0 | 236 | 6 | 29 | 105 | MBN1531750.1 DUF115 domain-containing protein [Spirochaetota bacterium] | diamond | 231 | 119 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetota bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;