RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1086823", tax_kingdom = "Metazoa" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1086823 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
193833 193833 PRJNA1086823_P_NODE_3301_length_424_cov_2.971510_g3184_i0 PRJNA1086823 3301 424 2.97151 12.5992024 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 723 0   NTclustered gi|68479954|gb|DQ076149.1| 6182 g3184 i0 97.625 0.992924528301887 421 10 99 0 1 421 432 12 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 421 723 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
193977 193977 PRJNA1086823_P_NODE_9921_length_273_cov_1.560000_g9804_i0 PRJNA1086823 9921 273 1.56 4.2588 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 185 2.3699999999999998e-42   NTclustered gi|226489652|emb|FN319249.1| 6182 g9804 i0 84.492 7.20512820512821 187 29 68 0 50 236 529 715 Schistosoma japonicum isolate Anhui full length mRNA clone SJFCE3184.003|FSE001-P00020-G17, complete sequence blastn 1967 185 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
28393880 28393880 PRJNA1086823_P_NODE_3446_length_417_cov_1.473837_g3329_i0 PRJNA1086823 3446 417 1.473837 6.14590029 Macrostomum lignano 282301 Platyhelminthes Platyhelminthes 66.2 1.45e-9   NR PAA86220.1 282301 g3329 i0 34.3 1.46762589928058 102 66 72.7 1 414 112 135 236 PAA86220.1 hypothetical protein BOX15_Mlig009159g3 [Macrostomum lignano] diamond 612 66.2 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum lignano

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;