RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1086823", tax_kingdom = "Fungi" and tax_phylum = "Blastocladiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1086823 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21870791 21870791 PRJNA1086823_P_NODE_9838_length_274_cov_1.462687_g9721_i0 PRJNA1086823 9838 274 1.462687 4.00776238 Blastocladiella britannica 64508 Fungi Fungi 164 9.62e-50   NR KAI9220752.1 64508 g9721 i0 87.5 2.87956204379562 88 11 96.4 0 273 10 64 151 KAI9220752.1 ubiquitin-conjugating enzyme/RWD-like protein [Blastocladiella britannica] diamond 789 164 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella britannica
27099072 27099072 PRJNA1086823_P_NODE_16482_length_246_cov_0.901734_g16365_i0 PRJNA1086823 16482 246 0.901734 2.21826564 Coelomomyces lativittatus 945690 Fungi Fungi 66.6 1.3e-10   NR KAJ1509224.1 945690 g16365 i0 44.4 1.53658536585366 63 35 76.8 0 7 195 133 195 KAJ1509224.1 hypothetical protein HMI56_006899, partial [Coelomomyces lativittatus] diamond 378 66.6 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Coelomomycetaceae Coelomomyces Coelomomyces lativittatus
30289059 30289059 PRJNA1086823_P_NODE_17852_length_244_cov_0.912281_g17735_i0 PRJNA1086823 17852 244 0.912281 2.22596564 Blastocladiella britannica 64508 Fungi Fungi 74.7 1.48e-14   NR KAI9224387.1 64508 g17735 i0 56.9 0.713114754098361 58 25 71.3 0 34 207 55 112 KAI9224387.1 hypothetical protein BC828DRAFT_373660 [Blastocladiella britannica] diamond 174 74.7 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella britannica

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;