RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1086823", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA1086823 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
193687 193687 PRJNA1086823_P_NODE_13561_length_251_cov_0.876404_g13444_i0 PRJNA1086823 13561 251 0.876404 2.19977404 Ripella platypodia 2047821 Discosea other_Eukaryota 429 8.99e-116   NTclustered gi|1269228378|gb|MF683503.1| 2047821 g13444 i0 97.61 100.792828685259 251 4 100 1 1 251 1510 1262 Ripella platypodia clone 26.10.41 18S ribosomal RNA gene, partial sequence blastn 25299 429 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella platypodia
1468576 1468576 PRJNA1086823_P_NODE_8462_length_288_cov_1.255814_g8345_i0 PRJNA1086823 8462 288 1.255814 3.61674432 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 276 1.45e-69   NTclustered gi|300078498|gb|GU001160.1| 5755 g8345 i0 85.764 21.1388888888889 288 10 100 16 1 288 5438 5694 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6088 276 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
15496316 15496316 PRJNA1086823_P_NODE_12573_length_252_cov_1.664804_g12456_i0 PRJNA1086823 12573 252 1.664804 4.19530608 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 466 6.89e-127   NTclustered gi|399764261|gb|JQ271772.1| 1105345 g12456 i0 100 73.9285714285714 252 0 100 0 1 252 303 554 Vexillifera bacillipedes strain 6HZM 18S ribosomal RNA gene, partial sequence blastn 18630 466 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes
15496604 15496604 PRJNA1086823_P_NODE_8733_length_285_cov_1.424528_g8616_i0 PRJNA1086823 8733 285 1.424528 4.0599048 Vannella septentrionalis 197531 Discosea other_Eukaryota 490 4.71e-134   NTclustered gi|300078499|gb|GU001161.1| 197531 g8616 i0 97.88 80.2456140350877 283 6 99 0 1 283 947 1229 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 22870 490 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
25243768 25243768 PRJNA1086823_P_NODE_8380_length_289_cov_1.083333_g8263_i0 PRJNA1086823 8380 289 1.083333 3.13083237 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 159 2.35e-48   NR XP_004339588.1 1257118 g8263 i0 90.7 1.78546712802768 86 8 89.3 0 31 288 5 90 XP_004339588.1 60S ribosomal protein, putative [Acanthamoeba castellanii str. Neff] diamond 516 159 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28267474 28267474 PRJNA1086823_P_NODE_1306_length_655_cov_1.594502_g1193_i0 PRJNA1086823 1306 655 1.594502 10.4439881 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 303 1.3899999999999998e-99   NR XP_004353078.1 1257118 g1193 i0 68.2 2.97709923664122 217 68 99.4 1 3 653 136 351 XP_004353078.1 meiotic recombinase Dmc1, putative [Acanthamoeba castellanii str. Neff] diamond 1950 303 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;