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contig_metadata

15 rows where bioproject = "PRJNA1085664" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 15 ✖

tax_clade 1

bioproject 1

  • PRJNA1085664 · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1468171 1468171 PRJNA1085664_S_NODE_24822_length_177_cov_1.074627_g24403_i0 PRJNA1085664 24822 177 1.074627 1.90208979 Carlavirus latensdianthi 3427766 Viruses Viruses 58.4 3.21e-4   NTclustered gi|1995060321|gb|MN450069.1| 12164 g24403 i0 97.143 0.19774011299435 35 0 19 1 1 34 15 49 Carnation latent virus isolate KL, complete genome blastn 35 58.4 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
2744310 2744310 PRJNA1085664_S_NODE_7223_length_320_cov_3.122744_g6804_i0 PRJNA1085664 7223 320 3.122744 9.9927808 Porcine bastrovirus 2588662 Viruses Viruses 56.5 0.002   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g6804 i0 100 0.18125 30 0 9 0 291 320 42 13 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 58 56.5 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
9121114 9121114 PRJNA1085664_S_NODE_12828_length_242_cov_22.422111_g12409_i0 PRJNA1085664 12828 242 22.422111 54.26150862 Porcine bastrovirus 2588662 Viruses Viruses 54.7 0.006   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g12409 i0 100 0.235537190082645 29 0 12 0 214 242 41 13 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 57 54.7 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
11672185 11672185 PRJNA1085664_S_NODE_17030_length_211_cov_0.857143_g16611_i0 PRJNA1085664 17030 211 0.857143 1.80857173 Porcine bastrovirus 2588662 Viruses Viruses 56.5 0.001   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g16611 i0 100 0.274881516587678 30 0 14 0 182 211 42 13 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 58 56.5 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
15496175 15496175 PRJNA1085664_S_NODE_18193_length_204_cov_1.490683_g17774_i0 PRJNA1085664 18193 204 1.490683 3.04099332 Jujube closterovirus 1 3043313 Viruses Viruses 54.7 0.005   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g17774 i0 100 0.279411764705882 29 0 14 0 1 29 6 34 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 57 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
18045322 18045322 PRJNA1085664_S_NODE_36635_length_151_cov_0.870370_g36216_i0 PRJNA1085664 36635 151 0.87037 1.3142587 Pestivirus bovis 3052619 Viruses Viruses 230 5.299999999999999e-56   NTclustered gi|972905812|gb|KU200260.1| 11099 g36216 i0 94.04 93.6291390728477 151 9 100 0 1 151 8809 8959 Bovine viral diarrhea virus 1, partial genome blastn 14138 230 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
18868989 18868989 PRJNA1085664_S_NODE_6755_length_330_cov_1.637631_g6336_i0 PRJNA1085664 6755 330 1.637631 5.4041823 Pestivirus 11095 Viruses Viruses 584 2.48e-162   NTclustered gi|2672396898|gb|PP277983.1| 11099 g6336 i0 98.78 52.4212121212121 328 4 99 0 1 328 10047 9720 Bovine viral diarrhea virus 1 isolate NX2023, complete genome blastn 17299 584 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
19319256 19319256 PRJNA1085664_S_NODE_19856_length_196_cov_1.117647_g19437_i0 PRJNA1085664 19856 196 1.117647 2.19058812 Gammaretrovirus porConc 3428960 Viruses Viruses 287 4.27e-73   NTclustered gi|119393850|gb|EF133960.1| 509154 g19437 i0 97.059 83.5765306122449 170 5 87 0 26 195 2243 2412 Porcine endogenous type C retrovirus clone 6 from China, complete genome blastn 16381 287 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus porConc
19319349 19319349 PRJNA1085664_S_NODE_7376_length_317_cov_3.281022_g6957_i0 PRJNA1085664 7376 317 3.281022 10.40083974 Jujube closterovirus 1 3043313 Viruses Viruses 58.4 6.38e-4   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g6957 i0 100 0.0977917981072555 31 0 10 0 1 31 8 38 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 31 58.4 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
20143699 20143699 PRJNA1085664_S_NODE_12656_length_244_cov_2.034826_g12237_i0 PRJNA1085664 12656 244 2.034826 4.96497544 Pestivirus 11095 Viruses Viruses 442 1.1199999999999994e-119   NTclustered gi|1093530907|gb|KT943518.1| 11099 g12237 i0 99.587 49.7377049180328 242 1 99 0 3 244 8195 7954 Bovine viral diarrhea virus 1 isolate BJ1201, complete genome blastn 12136 446 0.991031390134529 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
20594635 20594635 PRJNA1085664_S_NODE_30237_length_161_cov_4.254237_g29818_i0 PRJNA1085664 30237 161 4.254237 6.84932157 Norovirus norwalkense 3431196 Viruses Viruses 279 5.64e-71   NTclustered gi|1189484999|gb|KY905331.1| 122929 g29818 i0 99.351 95.6024844720497 154 1 96 0 8 161 209 56 Norovirus GII strain Hu/GII.P4 New Orleans 2009_GII.4 Sydney 2012/NSW789Z/2016/AU, partial genome blastn 15392 279 1 Viruses Norovirus GII Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Caliciviridae Norovirus Norovirus norwalkense
21870415 21870415 PRJNA1085664_S_NODE_34618_length_153_cov_0.872727_g34199_i0 PRJNA1085664 34618 153 0.872727 1.33527231 Maltschvirus maltsch 2956182 Viruses Viruses 54.7 0.003   NTclustered gi|1839143214|emb|LR796235.1| 2100421 g34199 i0 100 0.189542483660131 29 0 19 0 4 32 109159 109131 uncultured Caudovirales phage genome assembly blastn 29 54.7 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes   Peduoviridae Maltschvirus Maltschvirus maltsch
23145805 23145805 PRJNA1085664_S_NODE_99_length_7351_cov_66.451013_g98_i0 PRJNA1085664 99 7351 66.451013 4884.81396563 Norovirus norwalkense 3431196 Viruses Viruses 13071 0   NTclustered gi|1189484999|gb|KY905331.1| 122929 g98 i0 98.841 99.6180111549449 7336 79 99 1 16 7351 7546 217 Norovirus GII strain Hu/GII.P4 New Orleans 2009_GII.4 Sydney 2012/NSW789Z/2016/AU, partial genome blastn 732292 13071 1 Viruses Norovirus GII Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Caliciviridae Norovirus Norovirus norwalkense
24419324 24419324 PRJNA1085664_S_NODE_11920_length_252_cov_1.267943_g11501_i0 PRJNA1085664 11920 252 1.267943 3.19521636 Orthopoxvirus monkeypox 3431483 Viruses Viruses 54.7 0.006   NTclustered gi|2309594316|gb|OP536747.1| 10244 g11501 i0 100 11.5079365079365 29 0 12 0 179 207 119274 119302 Monkeypox virus isolate 9000365, partial genome blastn 2900 54.7 1 Viruses   Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae Orthopoxvirus Orthopoxvirus monkeypox
28204312 28204312 PRJNA1085664_S_NODE_32126_length_157_cov_1.684211_g31707_i0 PRJNA1085664 32126 157 1.684211 2.64421127 Pimephales minnow adintovirus 2609864 Viruses Viruses 58.2 2.49e-8   NR DAC81394.1 2609864 g31707 i0 69.4 0.687898089171974 36 11 68.8 0 108 1 7 42 DAC81394.1 TPA_asm: FtsK [Pimephales minnow adintovirus] diamond 108 58.2 1 Viruses   Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Pimephales minnow adintovirus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;