RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJNA1085664" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1085664 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8670604 8670604 PRJNA1085664_S_NODE_9067_length_287_cov_3.803279_g8648_i0 PRJNA1085664 9067 287 3.803279 10.91541073 Metazoa 33208 Platyhelminthes Platyhelminthes 531 2.799999999999999e-146   NTclustered gi|60687563|gb|AY914894.1| 6182 g8648 i0 100 100 287 0 100 0 1 287 98 384 Schistosoma japonicum unknown mRNA blastn 28700 531 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
9121219 9121219 PRJNA1085664_S_NODE_34668_length_152_cov_34.293578_g34249_i0 PRJNA1085664 34668 152 34.293578 52.12623856 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 250 4.11e-62   NTclustered gi|56757963|gb|AY815390.1| 6182 g34249 i0 96.104 124.585526315789 154 4 100 1 1 152 1920 1767 Schistosoma japonicum SJCHGC01951 protein mRNA, complete cds blastn 18937 252 0.992063492063492 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
23145713 23145713 PRJNA1085664_S_NODE_18079_length_205_cov_0.888889_g17660_i0 PRJNA1085664 18079 205 0.888889 1.82222245 Diplorchis hangzhouensis 1131906 Platyhelminthes Platyhelminthes 54.7 0.005   NTclustered gi|379771686|gb|JQ038227.1| 1131906 g17660 i0 100 0.141463414634146 29 0 14 0 135 163 5389 5361 Diplorchis hangzhouensis mitochondrion sequence blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Monogenea Polystomatidea Polystomatidae Diplorchis Diplorchis hangzhouensis
27731199 27731199 PRJNA1085664_S_NODE_19004_length_200_cov_0.917197_g18585_i0 PRJNA1085664 19004 200 0.917197 1.834394 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 62 3.34e-9   NR AAX28387.3 6182 g18585 i0 82.9 4.305 41 7 61.5 0 123 1 126 166 AAX28387.3 SJCHGC01615 protein, partial [Schistosoma japonicum] diamond 861 62 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
29120389 29120389 PRJNA1085664_S_NODE_3229_length_453_cov_2.065854_g2817_i0 PRJNA1085664 3229 453 2.065854 9.35831862 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 280 1.3899999999999999e-89   NR AAX28387.3 6182 g2817 i0 98.7 8 151 2 100 0 453 1 297 447 AAX28387.3 SJCHGC01615 protein, partial [Schistosoma japonicum] diamond 3624 280 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;