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contig_metadata

6 rows where bioproject = "PRJNA1085664" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1085664 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9121156 9121156 PRJNA1085664_S_NODE_22788_length_184_cov_1.000000_g22369_i0 PRJNA1085664 22788 184 1 1.84 Mycoplasma wenyonii 65123 Bacteria Bacteria 224 3.139999999999999e-54   NTclustered gi|395455868|gb|CP003703.1| 1197325 g22369 i0 93.421 0.826086956521739 152 9 83 1 1 152 265012 264862 Mycoplasma wenyonii str. Massachusetts, complete genome blastn 152 224 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii
21870397 21870397 PRJNA1085664_S_NODE_28558_length_166_cov_1.178862_g28139_i0 PRJNA1085664 28558 166 1.178862 1.95691092 Mycoplasma wenyonii 65123 Bacteria Bacteria 263 5.9e-66   NTclustered gi|395455868|gb|CP003703.1| 1197325 g28139 i0 95.21 1.77710843373494 167 6 100 2 1 166 24126 24291 Mycoplasma wenyonii str. Massachusetts, complete genome blastn 295 263 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii
27257128 27257128 PRJNA1085664_S_NODE_29983_length_162_cov_1.605042_g29564_i0 PRJNA1085664 29983 162 1.605042 2.60016804 Candidatus Mycoplasma haematobovis 432608 Bacteria Bacteria 54.3 1.01e-6   NR WP_187150751.1 432608 g29564 i0 57.1 0.777777777777778 42 18 77.8 0 3 128 433 474 WP_187150751.1 hypothetical protein [Candidatus Mycoplasma haematobovis] diamond 126 54.3 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Candidatus Mycoplasma haematobovis
28046602 28046602 PRJNA1085664_S_NODE_23065_length_183_cov_1.007143_g22646_i0 PRJNA1085664 23065 183 1.007143 1.84307169 Mycoplasma wenyonii 65123 Bacteria Bacteria 50.4 2.95e-5   NR WP_112665014.1 65123 g22646 i0 81.5 0.442622950819672 27 5 44.3 0 5 85 12 38 WP_112665014.1 hypothetical protein [Mycoplasma wenyonii] diamond 81 50.4 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii
28678279 28678279 PRJNA1085664_S_NODE_23387_length_182_cov_0.906475_g22968_i0 PRJNA1085664 23387 182 0.906475 1.6497845 Candidatus Mycoplasma haematobovis 432608 Bacteria Bacteria 110 1.52e-26   NR WP_187150185.1 432608 g22968 i0 98.3 0.989010989010989 60 1 98.9 0 2 181 513 572 WP_187150185.1 VacB/RNase II family 3'-5' exoribonuclease [Candidatus Mycoplasma haematobovis] diamond 180 110 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Candidatus Mycoplasma haematobovis
31489848 31489848 PRJNA1085664_S_NODE_20456_length_193_cov_1.880000_g20037_i0 PRJNA1085664 20456 193 1.88 3.6284 Candidatus Mycoplasma haematobovis 432608 Bacteria Bacteria 81.3 3.49e-16   NR WP_187150734.1 432608 g20037 i0 62.3 0.948186528497409 61 21 94.8 1 192 10 33 91 WP_187150734.1 hypothetical protein [Candidatus Mycoplasma haematobovis] diamond 183 81.3 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Candidatus Mycoplasma haematobovis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;