RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

22 rows where bioproject = "PRJNA1085664" and tax_phylum = "Arthropoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Arthropoda · 22 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1085664 · 22 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
193544 193544 PRJNA1085664_S_NODE_26641_length_171_cov_1.859375_g26222_i0 PRJNA1085664 26641 171 1.859375 3.17953125 Drymonia dodonaea 988176 Arthropoda Arthropoda 52.8 0.014   NTclustered gi|2918369730|emb|OZ237797.1| 988176 g26222 i0 100 0.16374269005848 28 0 16 0 127 154 12793808 12793781 Drymonia dodonaea genome assembly, chromosome: 4 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Lepidoptera Notodontidae Drymonia Drymonia dodonaea
2744240 2744240 PRJNA1085664_S_NODE_23863_length_180_cov_1.416058_g23444_i0 PRJNA1085664 23863 180 1.416058 2.5489044 Bombyx mori 7091 Arthropoda Arthropoda 65.8 1.96e-6   NTclustered gi|1237088976|dbj|LC316987.1| 7091 g23444 i0 97.368 0.677777777777778 38 1 21 0 1 38 28 65 Bombyx mori BmSfp53 mRNA for seminal fluid protein 53, complete cds blastn 122 65.8 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Lepidoptera Bombycidae Bombyx Bombyx mori
4020185 4020185 PRJNA1085664_S_NODE_7244_length_320_cov_1.039711_g6825_i0 PRJNA1085664 7244 320 1.039711 3.3270752 Timema monikensis 170555 Arthropoda Arthropoda 58.4 6.45e-4   NTclustered gi|1946411097|emb|OB793204.1| 170555 g6825 i0 97.059 0.28125 34 1 11 0 212 245 168543 168510 3_Tms_b3v08 blastn 90 58.4 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Phasmatodea Timematidae Timema Timema monikensis
4845412 4845412 PRJNA1085664_S_NODE_10904_length_263_cov_3.127273_g10485_i0 PRJNA1085664 10904 263 3.127273 8.22472799 Timema 61471 Arthropoda Arthropoda 54.7 0.007   NTclustered gi|1947819235|emb|OD566261.1| 61472 g10485 i0 100 0.220532319391635 29 0 11 0 160 188 111505 111477 4_Tbi_b3v08 blastn 58 54.7 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Phasmatodea Timematidae Timema Timema bartmani
5296261 5296261 PRJNA1085664_S_NODE_12965_length_241_cov_2.186869_g12546_i0 PRJNA1085664 12965 241 2.186869 5.27035429 Bombyx mori 7091 Arthropoda Arthropoda 56.5 0.002   NTclustered gi|1237088976|dbj|LC316987.1| 7091 g12546 i0 100 0.356846473029046 30 0 12 0 212 241 57 28 Bombyx mori BmSfp53 mRNA for seminal fluid protein 53, complete cds blastn 86 56.5 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Lepidoptera Bombycidae Bombyx Bombyx mori
6571420 6571420 PRJNA1085664_S_NODE_19766_length_196_cov_1.882353_g19347_i0 PRJNA1085664 19766 196 1.882353 3.68941188 Limulus polyphemus 6850 Arthropoda Arthropoda 52.8 0.017   NTclustered gi|1238828986|ref|XM_013938960.2| 6850 g19347 i0 100 0.285714285714286 28 0 14 0 7 34 3280 3253 PREDICTED: Limulus polyphemus ribokinase-like (LOC106478414), transcript variant X1, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Arthropoda Merostomata Xiphosura Limulidae Limulus Limulus polyphemus
7846170 7846170 PRJNA1085664_S_NODE_20267_length_194_cov_1.417219_g19848_i0 PRJNA1085664 20267 194 1.417219 2.74940486 Platynothrus peltifer 128015 Arthropoda Arthropoda 58.4 3.6e-4   NTclustered gi|2579718318|gb|CP133307.1| 128015 g19848 i0 100 1.45876288659794 31 0 16 0 164 194 9149533 9149503 Platynothrus peltifer isolate 155_3 chromosome 2 blastn 283 58.4 1 Eukaryota Opisthokonta Metazoa Arthropoda Arachnida Sarcoptiformes Camisiidae Platynothrus Platynothrus peltifer
9121165 9121165 PRJNA1085664_S_NODE_23828_length_180_cov_1.751825_g23409_i0 PRJNA1085664 23828 180 1.751825 3.153285 Glaucopsyche melanops 1002887 Arthropoda Arthropoda 54.7 0.004   NTclustered gi|2919553660|emb|OZ238364.1| 1002887 g23409 i0 96.875 0.355555555555556 32 1 18 0 13 44 24059155 24059124 Glaucopsyche melanops genome assembly, chromosome: W blastn 64 54.7 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Lepidoptera Lycaenidae Glaucopsyche Glaucopsyche melanops
10396831 10396831 PRJNA1085664_S_NODE_15709_length_219_cov_2.573864_g15290_i0 PRJNA1085664 15709 219 2.573864 5.63676216 Lutzomyia longipalpis 7200 Arthropoda Arthropoda 56.5 0.001   NTclustered gi|2500586479|ref|XR_008750134.1| 7200 g15290 i0 96.97 0.406392694063927 33 1 15 0 1 33 717 685 PREDICTED: Lutzomyia longipalpis troponin C-like (LOC129786533), transcript variant X2, misc_RNA blastn 89 56.5 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Diptera Psychodidae Lutzomyia Lutzomyia longipalpis
11672246 11672246 PRJNA1085664_S_NODE_32030_length_157_cov_2.438596_g31611_i0 PRJNA1085664 32030 157 2.438596 3.82859572 Cydia pomonella 82600 Arthropoda Arthropoda 52.8 0.013   NTclustered gi|2639390682|ref|XM_061868808.1| 82600 g31611 i0 100 0.356687898089172 28 0 18 0 27 54 126 99 PREDICTED: Cydia pomonella muscle calcium channel subunit alpha-1 (LOC133530754), transcript variant X2, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Lepidoptera Tortricidae Cydia Cydia pomonella
11672260 11672260 PRJNA1085664_S_NODE_37130_length_150_cov_1.037383_g36711_i0 PRJNA1085664 37130 150 1.037383 1.5560745 Charissa obscurata 204503 Arthropoda Arthropoda 54.7 0.003   NTclustered gi|2919570218|emb|OZ238379.1| 204503 g36711 i0 100 0.566666666666667 29 0 19 0 5 33 18363215 18363243 Charissa obscurata genome assembly, chromosome: 13 blastn 85 54.7 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Lepidoptera Geometridae Charissa Charissa obscurata
12496131 12496131 PRJNA1085664_S_NODE_11270_length_259_cov_1.236111_g10851_i0 PRJNA1085664 11270 259 1.236111 3.20152749 Timema 61471 Arthropoda Arthropoda 52.8 0.024   NTclustered gi|1947819297|emb|OD566285.1| 61472 g10851 i0 100 0.324324324324324 28 0 11 0 76 103 91927 91954 4_Tbi_b3v08 blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Phasmatodea Timematidae Timema Timema bartmani
13770696 13770696 PRJNA1085664_S_NODE_25311_length_175_cov_2.181818_g24892_i0 PRJNA1085664 25311 175 2.181818 3.8181815 Arthropoda 6656 Arthropoda Arthropoda 60.2 8.81e-5   NTclustered gi|2918381335|emb|OZ238053.1| 132710 g24892 i0 100 5.54857142857143 32 0 18 0 56 87 16731473 16731504 Zerynthia rumina genome assembly, chromosome: 18 blastn 971 60.2 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Lepidoptera Papilionidae Zerynthia Zerynthia rumina
15496257 15496257 PRJNA1085664_S_NODE_5853_length_352_cov_8.579288_g5434_i0 PRJNA1085664 5853 352 8.579288 30.19909376 Penaeus monodon 6687 Arthropoda Arthropoda 52.8 0.033   NTclustered gi|1832334880|gb|MK599468.1| 6687 g5434 i0 100 0.0795454545454545 28 0 8 0 325 352 121 94 Penaeus monodon C-type lectin mRNA, complete cds blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Arthropoda Malacostraca Decapoda Penaeidae Penaeus Penaeus monodon
18045242 18045242 PRJNA1085664_S_NODE_17875_length_206_cov_1.177914_g17456_i0 PRJNA1085664 17875 206 1.177914 2.42650284 Liposcelis decolor 209926 Arthropoda Arthropoda 381 2.0199999999999994e-101   NTclustered gi|338776974|gb|HQ110069.1| 209926 g17456 i0 100 101.058252427184 206 0 100 0 1 206 262 57 Liposcelis decolor strain L4c 18S small subunit ribosomal RNA gene, partial sequence blastn 20818 381 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Psocodea Liposcelididae Liposcelis Liposcelis decolor
18045264 18045264 PRJNA1085664_S_NODE_22835_length_183_cov_3.300000_g22416_i0 PRJNA1085664 22835 183 3.3 6.039 Satyrium ilicis 876074 Arthropoda Arthropoda 58.4 3.35e-4   NTclustered gi|2918386101|emb|OZ238115.1| 876074 g22416 i0 90.698 0.234972677595628 43 4 23 0 87 129 56559195 56559237 Satyrium ilicis genome assembly, chromosome: 6 blastn 43 58.4 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Lepidoptera Lycaenidae Satyrium Satyrium ilicis
20594641 20594641 PRJNA1085664_S_NODE_31437_length_159_cov_1.068966_g31018_i0 PRJNA1085664 31437 159 1.068966 1.69965594 Penaeus monodon 6687 Arthropoda Arthropoda 52.8 0.013   NTclustered gi|952952252|gb|KU156741.1| 6687 g31018 i0 100 0.176100628930818 28 0 18 0 132 159 31 4 Penaeus monodon chitin deacetylase 1 (CDA1) mRNA, complete cds blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Arthropoda Malacostraca Decapoda Penaeidae Penaeus Penaeus monodon
21419370 21419370 PRJNA1085664_S_NODE_7357_length_317_cov_6.109489_g6938_i0 PRJNA1085664 7357 317 6.109489 19.36708013 root 1 Root_unresolved Root_unresolved 52.8 0.03   NTclustered gi|1184387702|emb|LT835105.1| 85552 g6938 i0 100 0.176656151419558 28 0 9 0 1 28 6 33 Scylla paramamosain mRNA for Toll-like receptor 2 (SpTLR2 gene) blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Arthropoda Malacostraca Decapoda Portunidae Scylla Scylla paramamosain
21870332 21870332 PRJNA1085664_S_NODE_14698_length_227_cov_1.516304_g14279_i0 PRJNA1085664 14698 227 1.516304 3.44201008 Leiobunum subalpinum 3086104 Arthropoda Arthropoda 54.7 0.006   NTclustered gi|2920023896|emb|OZ239120.1| 3086104 g14279 i0 92.308 0.171806167400881 39 1 17 2 13 50 35277171 35277208 Leiobunum subalpinum genome assembly, chromosome: 3 blastn 39 54.7 1 Eukaryota Opisthokonta Metazoa Arthropoda Arachnida Opiliones Sclerosomatidae Leiobunum Leiobunum subalpinum
21870345 21870345 PRJNA1085664_S_NODE_18158_length_204_cov_1.819876_g17739_i0 PRJNA1085664 18158 204 1.819876 3.71254704 Penaeus monodon 6687 Arthropoda Arthropoda 54.7 0.005   NTclustered gi|1832334880|gb|MK599468.1| 6687 g17739 i0 100 0.588235294117647 29 0 14 0 176 204 115 87 Penaeus monodon C-type lectin mRNA, complete cds blastn 120 54.7 1 Eukaryota Opisthokonta Metazoa Arthropoda Malacostraca Decapoda Penaeidae Penaeus Penaeus monodon
23145795 23145795 PRJNA1085664_S_NODE_7299_length_319_cov_1.565217_g6880_i0 PRJNA1085664 7299 319 1.565217 4.99304223 Scylla paramamosain 85552 Arthropoda Arthropoda 54.7 0.008   NTclustered gi|1184387702|emb|LT835105.1| 85552 g6880 i0 100 0.178683385579937 29 0 9 0 1 29 6 34 Scylla paramamosain mRNA for Toll-like receptor 2 (SpTLR2 gene) blastn 57 54.7 1 Eukaryota Opisthokonta Metazoa Arthropoda Malacostraca Decapoda Portunidae Scylla Scylla paramamosain
25243678 25243678 PRJNA1085664_S_NODE_25760_length_174_cov_1.297710_g25341_i0 PRJNA1085664 25760 174 1.29771 2.2580154 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 54.7 0.004   NTclustered gi|312283558|dbj|AB561905.1| 27405 g25341 i0 100 0.494252873563218 29 0 17 0 1 29 19 47 Marsupenaeus japonicus mRNA for astakine, complete cds blastn 86 54.7 1 Eukaryota Opisthokonta Metazoa Arthropoda Malacostraca Decapoda Penaeidae Penaeus Penaeus japonicus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;