RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1085664" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA1085664 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8670596 8670596 PRJNA1085664_S_NODE_31747_length_158_cov_1.321739_g31328_i0 PRJNA1085664 31747 158 1.321739 2.08834762 Eukaryota 2759 Plants Plants 292 7.07e-75   NTclustered gi|371782094|emb|HE610126.1| 33092 g31328 i0 100 100.006329113924 158 0 100 0 1 158 5607 5450 Koliella longiseta 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 470-1 blastn 15801 292 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
9121135 9121135 PRJNA1085664_S_NODE_18468_length_202_cov_5.081761_g18049_i0 PRJNA1085664 18468 202 5.081761 10.26515722 Pseudococcomyxa simplex 464287 Plants Plants 158 3.6199999999999997e-34   NTclustered gi|2644500056|gb|PP079694.1| 464287 g18049 i0 81.159 78.3762376237624 207 30 100 8 1 202 519 721 Pseudococcomyxa simplex isolate KC5 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15832 158 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Oocystaceae Pseudococcomyxa Pseudococcomyxa simplex
14222263 14222263 PRJNA1085664_S_NODE_25892_length_173_cov_3.600000_g25473_i0 PRJNA1085664 25892 173 3.6 6.228 uncultured Apatococcus 1229086 Plants Plants 320 3.61e-83   NTclustered gi|1031961068|gb|KX025109.1| 1229086 g25473 i0 100 94.2832369942196 173 0 100 0 1 173 1246 1418 Uncultured Apatococcus clone GOGs_K08 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence blastn 16311 320 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       uncultured Apatococcus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;