RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1085664" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA1085664 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30225427 30225427 PRJNA1085664_S_NODE_37172_length_150_cov_0.897196_g36753_i0 PRJNA1085664 37172 150 0.897196 1.345794 Posidoniimonas polymericola 2528002 Bacteria Bacteria 40.4 0.0212   NR WP_146590768.1 2528002 g36753 i0 47.7 0.88 44 21 86 2 20 148 31 73 WP_146590768.1 hypothetical protein [Posidoniimonas polymericola] diamond 132 40.4 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Lacipirellulaceae Posidoniimonas Posidoniimonas polymericola
30352407 30352407 PRJNA1085664_S_NODE_11812_length_253_cov_1.371429_g11393_i0 PRJNA1085664 11812 253 1.371429 3.46971537 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 43.9 0.00823   NR MEY2498050.1 2026799 g11393 i0 31 1.03162055335968 87 41 83 3 249 40 36 120 MEY2498050.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 261 43.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30762693 30762693 PRJNA1085664_S_NODE_13354_length_238_cov_1.035897_g12935_i0 PRJNA1085664 13354 238 1.035897 2.46543486 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 42.4 0.0461   NR MBS0660550.1 2026799 g12935 i0 40.8 0.894957983193277 71 38 88.2 3 28 237 170 237 MBS0660550.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 213 42.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;