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contig_metadata

13 rows where bioproject = "PRJNA1082072", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 13 ✖

tax_phylum 1

  • Myxococcota · 13 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1082072 · 13 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26940837 26940837 PRJNA1082072_P_NODE_2622_length_245_cov_0.895349_g2615_i0 PRJNA1082072 2622 245 0.895349 2.19360505 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 47 0.00116   NR MBI3535551.1 2026735 g2615 i0 45.3 0.648979591836735 53 25 60 1 222 76 1 53 MBI3535551.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 159 47 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27383663 27383663 PRJNA1082072_P_NODE_2623_length_245_cov_0.895349_g2616_i0 PRJNA1082072 2623 245 0.895349 2.19360505 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 50.4 7.07e-5   NR MBI4412516.1 2026735 g2616 i0 40.5 2.55918367346939 79 39 88.2 2 241 26 208 285 MBI4412516.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 627 50.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27699649 27699649 PRJNA1082072_P_NODE_1044_length_337_cov_1.083333_g1037_i0 PRJNA1082072 1044 337 1.083333 3.65083221 Myxococcales bacterium 2026763 Bacteria Bacteria 47.4 0.00263   NR MCB9541223.1 2026763 g1037 i0 56.8 1.3620178041543 37 15 32.9 1 5 115 262 297 MCB9541223.1 thrombospondin type 3 repeat-containing protein [Myxococcales bacterium] diamond 459 47.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27699651 27699651 PRJNA1082072_P_NODE_2904_length_241_cov_1.809524_g2897_i0 PRJNA1082072 2904 241 1.809524 4.36095284 Myxococcales bacterium 2026763 Bacteria Bacteria 67 8.45e-11   NR MBL8607222.1 2026763 g2897 i0 66.7 2.98755186721992 57 17 68.5 1 207 43 91 147 MBL8607222.1 hypothetical protein [Myxococcales bacterium] diamond 720 67 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
29025749 29025749 PRJNA1082072_P_NODE_2028_length_252_cov_1.290503_g2021_i0 PRJNA1082072 2028 252 1.290503 3.25206756 Byssovorax sp. 2927945 Bacteria Bacteria 56.2 7.45e-7   NR MEP7125925.1 2927945 g2021 i0 47.9 2.33333333333333 71 36 84.5 1 13 225 487 556 MEP7125925.1 putative metal-binding motif-containing protein [Byssovorax sp.] diamond 588 56.2 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Byssovorax Byssovorax sp.
29025751 29025751 PRJNA1082072_P_NODE_928_length_349_cov_0.836957_g921_i0 PRJNA1082072 928 349 0.836957 2.92097993 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 47 0.00401   NR MBN2496246.1 2026735 g921 i0 33 0.885386819484241 103 65 85.1 3 10 306 77 179 MBN2496246.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 309 47 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30857319 30857319 PRJNA1082072_P_NODE_1754_length_272_cov_1.256281_g1747_i0 PRJNA1082072 1754 272 1.256281 3.41708432 Polyangiaceae bacterium 2268199 Bacteria Bacteria 129 2.91e-35   NR HEY2515554.1 2268199 g1747 i0 74.4 1.97426470588235 90 23 99.3 0 1 270 80 169 HEY2515554.1 TetR/AcrR family transcriptional regulator [Polyangiaceae bacterium] diamond 537 129 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
30983941 30983941 PRJNA1082072_P_NODE_1234_length_312_cov_0.966527_g1227_i0 PRJNA1082072 1234 312 0.966527 3.01556424 Kofleriaceae bacterium 2212474 Bacteria Bacteria 111 5.73e-26   NR HEX4312954.1 2212474 g1227 i0 53.8 1.97115384615385 104 48 100 0 312 1 942 1045 HEX4312954.1 Ig-like domain-containing protein [Kofleriaceae bacterium] diamond 615 111 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
31078707 31078707 PRJNA1082072_P_NODE_2815_length_242_cov_1.816568_g2808_i0 PRJNA1082072 2815 242 1.816568 4.39609456 Kofleriaceae bacterium 2212474 Bacteria Bacteria 73.9 3.82e-13   NR MBE7447977.1 2212474 g2808 i0 49.4 4.94628099173554 79 37 97.9 2 237 1 803 878 MBE7447977.1 tandem-95 repeat protein [Kofleriaceae bacterium] diamond 1197 73.9 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
31331369 31331369 PRJNA1082072_P_NODE_1436_length_289_cov_1.425926_g1429_i0 PRJNA1082072 1436 289 1.425926 4.12092614 Myxococcales bacterium 2026763 Bacteria Bacteria 51.2 6.77e-5   NR MBU6161104.1 2026763 g1429 i0 36.4 0.913494809688581 88 49 91.3 2 2 265 439 519 MBU6161104.1 M60 family metallopeptidase [Myxococcales bacterium] diamond 264 51.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
31702434 31702434 PRJNA1082072_P_NODE_2397_length_248_cov_0.880000_g2390_i0 PRJNA1082072 2397 248 0.88 2.1824 Pseudomonadati 3379134 Bacteria Bacteria 95.5 8.1899999999999992e-21   NR MBM4252069.1 2026735 g2390 i0 60.5 4.92338709677419 81 32 98 0 6 248 8 88 MBM4252069.1 argininosuccinate lyase [Deltaproteobacteria bacterium] diamond 1221 95.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31742514 31742514 PRJNA1082072_P_NODE_1997_length_254_cov_1.701657_g1990_i0 PRJNA1082072 1997 254 1.701657 4.32220878 Archangium sp. 1872627 Bacteria Bacteria 60.5 1.74e-8   NR HYO70690.1 1872627 g1990 i0 54.3 0.543307086614173 46 21 54.3 0 7 144 236 281 HYO70690.1 hypothetical protein [Archangium sp.] diamond 138 60.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.
32303874 32303874 PRJNA1082072_P_NODE_2539_length_246_cov_0.890173_g2532_i0 PRJNA1082072 2539 246 0.890173 2.18982558 Bacteria 2 Bacteria Bacteria 59.7 4.15e-8   NR MBM4344022.1 2026735 g2532 i0 37.8 4.57317073170732 82 47 97.6 2 5 244 1364 1443 MBM4344022.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 1125 59.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;