RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1082072" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1082072 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27352203 27352203 PRJNA1082072_P_NODE_1343_length_299_cov_1.915929_g1336_i0 PRJNA1082072 1343 299 1.915929 5.72862771 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 94 1.68e-21   NR MCB0368409.1 2053517 g1336 i0 45.9 0.983277591973244 98 51 96.3 2 9 296 40 137 MCB0368409.1 hypothetical protein [Bdellovibrionales bacterium] diamond 294 94 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27573019 27573019 PRJNA1082072_P_NODE_1884_length_263_cov_1.621053_g1877_i0 PRJNA1082072 1884 263 1.621053 4.26336939 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 60.5 4.88e-10   NR MCB0369947.1 2053517 g1877 i0 54.3 0.980988593155893 46 20 52.5 1 1 138 4 48 MCB0369947.1 hypothetical protein [Bdellovibrionales bacterium] diamond 258 60.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29719783 29719783 PRJNA1082072_P_NODE_2490_length_247_cov_0.885057_g2483_i0 PRJNA1082072 2490 247 0.885057 2.18609079 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 127 4.75e-32   NR MCM2282229.1 2026715 g2483 i0 70.7 0.995951417004049 82 24 99.6 0 2 247 449 530 MCM2282229.1 ATP-binding protein [Pseudobdellovibrionaceae bacterium] diamond 246 127 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
30952359 30952359 PRJNA1082072_P_NODE_2074_length_251_cov_0.865169_g2067_i0 PRJNA1082072 2074 251 0.865169 2.17157419 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 60.1 8.74e-9   NR MCB0414338.1 2053517 g2067 i0 40.5 0.884462151394422 74 43 87.3 1 241 23 94 167 MCB0414338.1 hypothetical protein [Bdellovibrionales bacterium] diamond 222 60.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31363235 31363235 PRJNA1082072_P_NODE_1996_length_254_cov_1.701657_g1989_i0 PRJNA1082072 1996 254 1.701657 4.32220878 Bdellovibrionia bacterium 3034169 Bacteria Bacteria 102 1.5799999999999998e-23   NR MEO5970903.1 3034169 g1989 i0 56 0.992125984251969 84 37 99.2 0 1 252 224 307 MEO5970903.1 response regulator [Bdellovibrionia bacterium] diamond 252 102 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia       Bdellovibrionia bacterium
32185657 32185657 PRJNA1082072_P_NODE_2878_length_242_cov_0.911243_g2871_i0 PRJNA1082072 2878 242 0.911243 2.20520806 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 82 5.4e-16   NR MBX3041383.1 2026715 g2871 i0 65.5 0.681818181818182 55 19 68.2 0 3 167 786 840 MBX3041383.1 TraC family protein [Pseudobdellovibrionaceae bacterium] diamond 165 82 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
32438949 32438949 PRJNA1082072_P_NODE_2879_length_242_cov_0.911243_g2872_i0 PRJNA1082072 2879 242 0.911243 2.20520806 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 144 1.21e-39   NR HEY8279177.1 3034175 g2872 i0 93.8 1.98347107438017 80 5 99.2 0 241 2 228 307 HEY8279177.1 type IV pilus twitching motility protein PilT [Bdellovibrionota bacterium] diamond 480 144 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;