RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1082072", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA1082072 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20594234 20594234 PRJNA1082072_P_NODE_897_length_354_cov_1.508897_g890_i0 PRJNA1082072 897 354 1.508897 5.34149538 Pseudomonadati 3379134 Bacteria Bacteria 168 4.97e-46   NR MDH5717768.1 2053615 g890 i0 64.3 9.73728813559322 115 41 97.5 0 346 2 256 370 MDH5717768.1 glutamine synthetase III [Spirochaetia bacterium] diamond 3447 168 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia       Spirochaetia bacterium
27667894 27667894 PRJNA1082072_P_NODE_664_length_393_cov_1.234375_g657_i0 PRJNA1082072 664 393 1.234375 4.85109375 Spirochaetes bacterium GWB1_59_5 1802176 Bacteria Bacteria 56.2 1.52e-6   NR OHD18884.1 1802176 g657 i0 36.4 2.69465648854962 118 65 82.4 2 25 348 14 131 OHD18884.1 MAG: hypothetical protein A2Y38_14560 [Spirochaetes bacterium GWB1_59_5] diamond 1059 56.2 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetes bacterium GWB1_59_5

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;