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contig_metadata

16 rows where bioproject = "PRJNA1082072", tax_kingdom = "Metazoa" and tax_phylum = "Chordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 16 ✖

tax_kingdom 1

  • Metazoa · 16 ✖

tax_clade 1

bioproject 1

  • PRJNA1082072 · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1467762 1467762 PRJNA1082072_P_NODE_3002_length_230_cov_2.898089_g2995_i0 PRJNA1082072 3002 230 2.898089 6.6656047 Opisthokonta 33154 Chordata Chordata 114 4.51e-30   NR XP_043531236.1 36176 g2995 i0 73.6 5.8304347826087 72 19 93.9 0 15 230 4 75 XP_043531236.1 ADP-ribosylation factor 2-like [Chiloscyllium plagiosum] diamond 1341 115 0.991304347826087 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Orectolobiformes Hemiscylliidae Chiloscyllium Chiloscyllium plagiosum
9120802 9120802 PRJNA1082072_P_NODE_2268_length_249_cov_0.875000_g2261_i0 PRJNA1082072 2268 249 0.875 2.17875 Apteryx mantelli 2696672 Chordata Chordata 52.8 0.023   NTclustered gi|840008844|emb|LK064627.1| 202946 g2261 i0 100 0.112449799196787 28 0 11 0 127 154 1730660 1730633 Apteryx australis mantelli genome assembly AptMant0, scaffold scaffold25 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Apterygiformes Apterygidae Apteryx Apteryx mantelli
9945365 9945365 PRJNA1082072_P_NODE_2088_length_251_cov_0.865169_g2081_i0 PRJNA1082072 2088 251 0.865169 2.17157419 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 137 1.4599999999999998e-35   NR XP_051899046.1 685728 g2081 i0 75.9 20.808764940239 83 20 99.2 0 249 1 631 713 XP_051899046.1 aconitate hydratase, mitochondrial [Pristis pectinata] diamond 5223 138 0.992753623188406 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Rhinopristiformes Pristidae Pristis Pristis pectinata
11220600 11220600 PRJNA1082072_P_NODE_2169_length_250_cov_0.870056_g2162_i0 PRJNA1082072 2169 250 0.870056 2.17514 Aves 8782 Chordata Chordata 124 4.729999999999999e-24   NTclustered gi|2583782972|ref|XM_059826112.1| 37040 g2162 i0 77.273 42.612 220 44 87 5 34 250 175 391 PREDICTED: Gavia stellata ribosomal protein L27a (RPL27A), mRNA blastn 10653 124 1 Eukaryota Opisthokonta Metazoa Chordata Aves Gaviiformes Gaviidae Gavia Gavia stellata
19318916 19318916 PRJNA1082072_P_NODE_1216_length_314_cov_1.257261_g1209_i0 PRJNA1082072 1216 314 1.257261 3.94779954 Diceros bicornis 9805 Chordata Chordata 161 4.68e-35   NTclustered gi|2555101640|ref|XM_058537544.1| 77932 g1209 i0 79.098 51.3343949044586 244 43 76 7 48 287 101 340 PREDICTED: Diceros bicornis minor eukaryotic translation elongation factor 2 (EEF2), mRNA blastn 16119 161 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Rhinocerotidae Diceros Diceros bicornis
19318927 19318927 PRJNA1082072_P_NODE_376_length_493_cov_1.097619_g369_i0 PRJNA1082072 376 493 1.097619 5.41126167 Phallusia mammillata 59560 Chordata Chordata 197 7.41e-61   NR CAB3265696.1 59560 g369 i0 61.3 2.87829614604462 155 60 94.3 0 492 28 4 158 CAB3265696.1 60S ribosomal protein L13-like [Phallusia mammillata] diamond 1419 197 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
21419204 21419204 PRJNA1082072_P_NODE_1557_length_282_cov_1.842105_g1550_i0 PRJNA1082072 1557 282 1.842105 5.1947361 Artiodactyla 91561 Chordata Chordata 54.7 0.007   NTclustered gi|2782113514|ref|XM_059043140.2| 27615 g1550 i0 100 0.50354609929078 29 0 10 0 128 156 194 222 PREDICTED: Kogia breviceps collagen triple helix repeat containing 1 (CTHRC1), mRNA blastn 142 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Physeteridae Kogia Kogia breviceps
21870007 21870007 PRJNA1082072_P_NODE_398_length_484_cov_1.822384_g391_i0 PRJNA1082072 398 484 1.822384 8.82033856 Metazoa 33208 Chordata Chordata 113 1.01e-26   NR XP_044513496.1 191870 g391 i0 41.3 2.34297520661157 138 71 79.3 2 388 5 15 152 XP_044513496.1 procathepsin L-like [Gracilinanus agilis] diamond 1134 114 0.991228070175439 Eukaryota Opisthokonta Metazoa Chordata Mammalia Didelphimorphia Didelphidae Gracilinanus Gracilinanus agilis
27004088 27004088 PRJNA1082072_P_NODE_2662_length_245_cov_0.895349_g2655_i0 PRJNA1082072 2662 245 0.895349 2.19360505 Varanus komodoensis 61221 Chordata Chordata 60.1 3.03e-8   NR XP_044301879.1 61221 g2655 i0 33.3 1.02857142857143 84 44 99.2 3 3 245 1002 1076 XP_044301879.1 proprotein convertase subtilisin/kexin type 5 isoform X2 [Varanus komodoensis] diamond 252 60.1 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Varanidae Varanus Varanus komodoensis
27438436 27438436 PRJNA1082072_P_NODE_1923_length_260_cov_1.609626_g1916_i0 PRJNA1082072 1923 260 1.609626 4.1850276 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 106 5.48e-27   NR GCC23232.1 137246 g1916 i0 55.2 31.3384615384615 87 30 90 1 24 257 69 155 GCC23232.1 hypothetical protein [Chiloscyllium punctatum] diamond 8148 107 0.990654205607477 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Orectolobiformes Hemiscylliidae Chiloscyllium Chiloscyllium punctatum
27880205 27880205 PRJNA1082072_P_NODE_2725_length_244_cov_0.900585_g2718_i0 PRJNA1082072 2725 244 0.900585 2.1974274 Opisthokonta 33154 Chordata Chordata 99 6.400000000000001e-22   NR XP_035693536.1 7739 g2718 i0 58.4 18.5901639344262 77 32 94.7 0 7 237 1051 1127 XP_035693536.1 DNA polymerase alpha catalytic subunit-like [Branchiostoma floridae] diamond 4536 99.4 0.995975855130785 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
27974901 27974901 PRJNA1082072_P_NODE_1505_length_286_cov_1.178404_g1498_i0 PRJNA1082072 1505 286 1.178404 3.37023544 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 88.2 6.32e-18   NR KAH1176039.1 74926 g1498 i0 46.6 16.3846153846154 88 47 92.3 0 277 14 406 493 KAH1176039.1 hypothetical protein KIL84_020773 [Mauremys mutica] diamond 4686 88.6 0.99548532731377 Eukaryota Opisthokonta Metazoa Chordata   Testudines Geoemydidae Mauremys Mauremys mutica
28741234 28741234 PRJNA1082072_P_NODE_1907_length_262_cov_1.259259_g1900_i0 PRJNA1082072 1907 262 1.259259 3.29925858 Clavelina lepadiformis 159417 Chordata Chordata 99.8 4.16e-22   NR CAK8689709.1 159417 g1900 i0 73.3 0.984732824427481 86 23 98.5 0 3 260 667 752 CAK8689709.1 unnamed protein product [Clavelina lepadiformis] diamond 258 99.8 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Aplousobranchia Clavelinidae Clavelina Clavelina lepadiformis
29846381 29846381 PRJNA1082072_P_NODE_2451_length_247_cov_0.885057_g2444_i0 PRJNA1082072 2451 247 0.885057 2.18609079 Myodes glareolus 447135 Chordata Chordata 42.7 0.04   NR XP_048276707.1 447135 g2444 i0 40.4 0.692307692307692 57 33 68 1 38 205 38 94 XP_048276707.1 protein FAN isoform X3 [Myodes glareolus] diamond 171 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Myodes Myodes glareolus
30722310 30722310 PRJNA1082072_P_NODE_2754_length_243_cov_1.811765_g2747_i0 PRJNA1082072 2754 243 1.811765 4.40258895 Opisthokonta 33154 Chordata Chordata 89.7 1.66e-19   NR CAL5918967.1 7748 g2747 i0 83.7 14.716049382716 49 8 60.5 0 3 149 185 233 CAL5918967.1 unnamed protein product [Lampetra fluviatilis] diamond 3576 89.7 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
32628071 32628071 PRJNA1082072_P_NODE_2360_length_248_cov_0.880000_g2353_i0 PRJNA1082072 2360 248 0.88 2.1824 Rhinatrema bivittatum 194408 Chordata Chordata 50.8 5.05e-5   NR XP_029439941.1 194408 g2353 i0 37.6 7.22177419354839 85 47 99.2 2 3 248 211 292 XP_029439941.1 dual specificity protein kinase CLK4 isoform X3 [Rhinatrema bivittatum] diamond 1791 50.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Rhinatrematidae Rhinatrema Rhinatrema bivittatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;