RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1082072", tax_clade = "Haptista" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_phylum 1

tax_clade 1

  • Haptista · 3 ✖

bioproject 1

  • PRJNA1082072 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26750587 26750587 PRJNA1082072_P_NODE_1201_length_316_cov_0.917695_g1194_i0 PRJNA1082072 1201 316 0.917695 2.8999162 Pavlovales sp. CCMP2436 483367 Haptophyta other_Eukaryota 89.7 2.91e-18   NR KAJ1621668.1 483367 g1194 i0 53.8 1.70886075949367 78 31 69.3 1 262 44 2 79 KAJ1621668.1 hypothetical protein T492DRAFT_886545 [Pavlovales sp. CCMP2436] diamond 540 89.7 1 Eukaryota Haptista   Haptophyta Pavlovophyceae Pavlovales     Pavlovales sp. CCMP2436
28985585 28985585 PRJNA1082072_P_NODE_1488_length_287_cov_1.121495_g1481_i0 PRJNA1082072 1488 287 1.121495 3.21869065 root 1 Root_unresolved Root_unresolved 53.1 1.45e-5   NR KAL1512389.1 97485 g1481 i0 40 1.71428571428571 60 36 62.7 0 102 281 779 838 KAL1512389.1 hypothetical protein AB1Y20_005647 [Prymnesium parvum] diamond 492 53.1 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum
32344016 32344016 PRJNA1082072_P_NODE_2579_length_246_cov_0.890173_g2572_i0 PRJNA1082072 2579 246 0.890173 2.18982558 Chrysochromulina tobinii 1460289 Haptophyta other_Eukaryota 92 1.13e-20   NR KOO21128.1 1460289 g2572 i0 64.2 0.817073170731707 67 24 81.7 0 46 246 50 116 KOO21128.1 ATP-dependent protease peptidase subunit [Chrysochromulina tobinii] diamond 201 92 1 Eukaryota Haptista   Haptophyta   Prymnesiales Chrysochromulinaceae Chrysochromulina Chrysochromulina tobinii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;