RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1082072", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 5 ✖

tax_clade 1

  • Discoba · 5 ✖

bioproject 1

  • PRJNA1082072 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6571085 6571085 PRJNA1082072_P_NODE_2106_length_251_cov_0.865169_g2099_i0 PRJNA1082072 2106 251 0.865169 2.17157419 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 398 2.5399999999999994e-106   NTclustered gi|290996697|ref|XM_002680873.1| 5762 g2099 i0 95.219 1 251 12 100 0 1 251 14 264 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_60343), partial mRNA blastn 251 398 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
27478287 27478287 PRJNA1082072_P_NODE_2183_length_250_cov_0.870056_g2176_i0 PRJNA1082072 2183 250 0.870056 2.17514 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 70.9 4.8e-12   NR XP_002683268.1 5762 g2176 i0 77.1 0.576 48 11 57.6 0 144 1 51 98 XP_002683268.1 uncharacterized protein NAEGRDRAFT_61558 [Naegleria gruberi] diamond 144 70.9 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
28109628 28109628 PRJNA1082072_P_NODE_2125_length_251_cov_0.865169_g2118_i0 PRJNA1082072 2125 251 0.865169 2.17157419 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 150 1.5599999999999999e-43   NR XP_002671207.1 5762 g2118 i0 89.2 0.99203187250996006 83 9 99.2 0 1 249 41 123 XP_002671207.1 uncharacterized protein NAEGRDRAFT_73790 [Naegleria gruberi] diamond 249 150 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
31774167 31774167 PRJNA1082072_P_NODE_2237_length_249_cov_2.187500_g2230_i0 PRJNA1082072 2237 249 2.1875 5.446875 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 49.7 1.46e-4   NR AAM90826.1 5762 g2230 i0 51.3 2.18072289156627 39 19 47 0 244 128 606 644 AAM90826.1 basal body protein NBP-1 [Naegleria gruberi] diamond 543 49.7 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
32312430 32312430 PRJNA1082072_P_NODE_2799_length_243_cov_0.905882_g2792_i0 PRJNA1082072 2799 243 0.905882 2.20129326 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 145 3.82e-38   NR XP_002680205.1 5762 g2792 i0 96.3 0.987654320987654 80 2 98.8 1 241 2 338 416 XP_002680205.1 protein kinase [Naegleria gruberi] diamond 240 145 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;