RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1082072", tax_clade = "Apusozoa" and tax_superkingdom = "Eukaryota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Eukaryota · 2 ✖

tax_clade 1

  • Apusozoa · 2 ✖

bioproject 1

  • PRJNA1082072 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15495818 15495818 PRJNA1082072_P_NODE_1333_length_300_cov_1.436123_g1326_i0 PRJNA1082072 1333 300 1.436123 4.308369 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 165 6.639999999999999e-45   NR XP_013762907.1 461836 g1326 i0 82 20.81 100 18 100 0 1 300 140 239 XP_013762907.1 elongation factor 2 [Thecamonas trahens ATCC 50062] diamond 6243 166 0.993975903614458 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
23145372 23145372 PRJNA1082072_P_NODE_499_length_438_cov_1.558904_g492_i0 PRJNA1082072 499 438 1.558904 6.82799952 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 221 7.16e-69   NR XP_013760592.1 461836 g492 i0 73.1 0.993150684931507 145 39 99.3 0 438 4 94 238 XP_013760592.1 adenine nucleotide translocator [Thecamonas trahens ATCC 50062] diamond 435 221 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;