RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

16 rows where bioproject = "PRJNA1078753" and tax_phylum = "Perkinsozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 16 ✖

tax_clade 1

bioproject 1

  • PRJNA1078753 · 16 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
192419 192419 PRJNA1078753_P_NODE_13841_length_316_cov_1.189300_g13645_i0 PRJNA1078753 13841 316 1.1893 3.758188 Perkinsus olseni 32597 SAR_Eukaryotes SAR_Eukaryotes 145 4.75e-30   NTclustered gi|347516615|gb|HQ339915.1| 32597 g13645 i0 78.481 41.876582278481 237 40 75 7 81 316 310 536 Perkinsus olseni strain ALG1 heat shock protein 90 gene, partial cds blastn 13233 145 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
14221339 14221339 PRJNA1078753_P_NODE_34732_length_246_cov_1.335260_g34536_i0 PRJNA1078753 34732 246 1.33526 3.2847396 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 134 7.71e-27   NTclustered gi|294925728|ref|XM_002778944.1| 423536 g34536 i0 85.385 1.96341463414634 130 17 52 2 5 133 253 125 Perkinsus marinus ATCC 50983 40S ribosomal protein S11, putative, mRNA blastn 483 134 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
21869245 21869245 PRJNA1078753_P_NODE_1478_length_786_cov_4.214586_g1311_i0 PRJNA1078753 1478 786 4.214586 33.12664596 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 347 7.9e-117   NR XP_002774056.1 423536 g1311 i0 65.7 1.88931297709924 248 82 93.5 2 50 784 4 251 XP_002774056.1 conserved hypothetical protein [Perkinsus marinus ATCC 50983] diamond 1485 347 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
26837579 26837579 PRJNA1078753_P_NODE_41021_length_242_cov_0.911243_g40825_i0 PRJNA1078753 41021 242 0.911243 2.20520806 Perkinsus 28000 SAR_Eukaryotes SAR_Eukaryotes 44.7 8.06e-4   NR KAF4726173.1 32597 g40825 i0 42.6 2.67768595041322 54 30 66.9 1 76 237 3 55 KAF4726173.1 hypothetical protein FOZ62_019881, partial [Perkinsus olseni] diamond 648 44.7 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
27280280 27280280 PRJNA1078753_P_NODE_35523_length_246_cov_0.890173_g35327_i0 PRJNA1078753 35523 246 0.890173 2.18982558 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 143 1.87e-37   NR KAF4676554.1 32597 g35327 i0 74.1 5.92682926829268 81 21 98.8 0 2 244 688 768 KAF4676554.1 hypothetical protein FOL46_000016 [Perkinsus olseni] diamond 1458 143 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
27469860 27469860 PRJNA1078753_P_NODE_43923_length_238_cov_2.600000_g43727_i0 PRJNA1078753 43923 238 2.6 6.188 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 85.9 3.19e-18   NR KAF4701558.1 32597 g43727 i0 45.6 17.8613445378151 79 43 99.6 0 237 1 59 137 KAF4701558.1 Protein transport protein Sec61 subunit alpha [Perkinsus olseni] diamond 4251 85.9 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
27541511 27541511 PRJNA1078753_P_NODE_3044_length_576_cov_3.326044_g2852_i0 PRJNA1078753 3044 576 3.326044 19.15801344 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 247 2.84e-80   NR XP_002778466.1 423536 g2852 i0 62.1 2.96354166666667 190 71 98.4 1 570 4 1 190 XP_002778466.1 cyclophilin, putative [Perkinsus marinus ATCC 50983] diamond 1707 247 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
27564217 27564217 PRJNA1078753_P_NODE_6664_length_416_cov_1.346939_g6468_i0 PRJNA1078753 6664 416 1.346939 5.60326624 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 107 5.04e-24   NR KAF4665274.1 32597 g6468 i0 46.8 16.6875 109 55 76.4 1 28 345 234 342 KAF4665274.1 Ca(2+)-dependent cysteine protease [Perkinsus olseni] diamond 6942 108 0.990740740740741 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
28038185 28038185 PRJNA1078753_P_NODE_24605_length_260_cov_1.427807_g24409_i0 PRJNA1078753 24605 260 1.427807 3.7122982 Perkinsus 28000 SAR_Eukaryotes SAR_Eukaryotes 60.8 1.98e-8   NR KAF4690325.1 32597 g24409 i0 40.8 3.27692307692308 71 40 79.6 1 254 48 304 374 KAF4690325.1 putative E3 ubiquitin-protein ligase herc3 [Perkinsus olseni] diamond 852 61.2 0.993464052287582 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
29277827 29277827 PRJNA1078753_P_NODE_25069_length_258_cov_1.448649_g24873_i0 PRJNA1078753 25069 258 1.448649 3.73751442 Perkinsus chesapeaki 330153 SAR_Eukaryotes SAR_Eukaryotes 127 4.39e-33   NR KAF4660984.1 330153 g24873 i0 66.7 0.976744186046512 84 27 97.7 1 254 3 226 308 KAF4660984.1 hypothetical protein FOL47_006890 [Perkinsus chesapeaki] diamond 252 127 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus chesapeaki
29774498 29774498 PRJNA1078753_P_NODE_23251_length_265_cov_1.781250_g23055_i0 PRJNA1078753 23251 265 1.78125 4.7203125 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 49.3 2.43e-4   NR KAF4659229.1 330153 g23055 i0 57.4 8.29811320754717 54 20 57.7 2 157 5 247 300 KAF4659229.1 mitochondrial processing peptidase beta subunit [Perkinsus chesapeaki] diamond 2199 49.3 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus chesapeaki
30541367 30541367 PRJNA1078753_P_NODE_42453_length_241_cov_1.375000_g42257_i0 PRJNA1078753 42453 241 1.375 3.31375 Perkinsus olseni 32597 SAR_Eukaryotes SAR_Eukaryotes 81.3 9.65e-18   NR KAF4729287.1 32597 g42257 i0 63.2 0.70954356846473 57 21 71 0 1 171 56 112 KAF4729287.1 hypothetical protein FOZ63_024682, partial [Perkinsus olseni] diamond 171 81.3 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
30920755 30920755 PRJNA1078753_P_NODE_9074_length_368_cov_1.688136_g8878_i0 PRJNA1078753 9074 368 1.688136 6.21234048 Perkinsus olseni 32597 SAR_Eukaryotes SAR_Eukaryotes 67.4 4.63e-11   NR KAF4737230.1 32597 g8878 i0 43.2 3.57065217391304 88 45 71.7 1 366 103 38 120 KAF4737230.1 hypothetical protein FOZ63_005478, partial [Perkinsus olseni] diamond 1314 67.4 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
31639041 31639041 PRJNA1078753_P_NODE_28816_length_250_cov_0.870056_g28620_i0 PRJNA1078753 28816 250 0.870056 2.17514 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 73.6 5.46e-13   NR KAF4677538.1 330153 g28620 i0 49.3 5.604 69 32 82.8 1 44 250 65 130 KAF4677538.1 hypothetical protein FOL47_000926 [Perkinsus chesapeaki] diamond 1401 73.9 0.995940460081191 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus chesapeaki
31670741 31670741 PRJNA1078753_P_NODE_30037_length_249_cov_1.312500_g29841_i0 PRJNA1078753 30037 249 1.3125 3.268125 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 47 0.0012   NR KAF4679912.1 32597 g29841 i0 37 3.79518072289157 81 50 96.4 1 244 5 109 189 KAF4679912.1 Tubulin tyrosine ligase-like, member [Perkinsus olseni] diamond 945 47 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
31711002 31711002 PRJNA1078753_P_NODE_30917_length_249_cov_0.875000_g30721_i0 PRJNA1078753 30917 249 0.875 2.17875 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 45.1 0.00588   NR XP_002785076.1 423536 g30721 i0 73.3 0.72289156626506 30 8 36.1 0 238 149 372 401 XP_002785076.1 Heterogeneous nuclear ribonucleoprotein 27C, putative [Perkinsus marinus ATCC 50983] diamond 180 45.1 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;