RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1078753" and tax_phylum = "Olpidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Olpidiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1078753 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1016927 1016927 PRJNA1078753_P_NODE_5841_length_439_cov_3.185792_g5645_i0 PRJNA1078753 5841 439 3.185792 13.98562688 Eukaryota 2759 Fungi Fungi 145 2.83e-41   NR KAG5463394.1 278681 g5645 i0 60 3.41685649202733 125 50 85.4 0 438 64 56 180 KAG5463394.1 MAG: 60S ribosomal protein L16, partial [Olpidium bornovanus] diamond 1500 145 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
11671108 11671108 PRJNA1078753_P_NODE_1190_length_873_cov_1.762500_g1039_i0 PRJNA1078753 1190 873 1.7625 15.386625 Olpidium bornovanus 278681 Fungi Fungi 445 5.0799999999999986e-151   NR BAL15351.1 278681 g1039 i0 73.8 4.97938144329897 290 76 99.7 0 3 872 119 408 BAL15351.1 translation elongation factor 2, partial [Olpidium bornovanus] diamond 4347 445 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
28480142 28480142 PRJNA1078753_P_NODE_37926_length_244_cov_0.900585_g37730_i0 PRJNA1078753 37926 244 0.900585 2.1974274 Fungi 4751 Fungi Fungi 128 1.4999999999999999e-33   NR KAG5459109.1 278681 g37730 i0 69.1 90.6885245901639 81 25 99.6 0 243 1 212 292 KAG5459109.1 MAG: putative centromere/microtubule binding protein cbf5, partial [Olpidium bornovanus] diamond 22128 129 0.992248062015504 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
32533779 32533779 PRJNA1078753_P_NODE_13699_length_317_cov_1.262295_g13503_i0 PRJNA1078753 13699 317 1.262295 4.00147515 Olpidium bornovanus 278681 Fungi Fungi 158 2.15e-44   NR KAG5459980.1 278681 g13503 i0 73.8 1.9589905362776 103 27 97.5 0 3 311 238 340 KAG5459980.1 MAG: glutamate dehydrogenase, partial [Olpidium bornovanus] diamond 621 158 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;