RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA1078753", tax_phylum = "Nitrososphaerota" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Archaea · 7 ✖

tax_phylum 1

  • Nitrososphaerota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1078753 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27478258 27478258 PRJNA1078753_P_NODE_22463_length_268_cov_2.184615_g22267_i0 PRJNA1078753 22463 268 2.184615 5.8547682 Candidatus Nitrosocosmicus oleophilus 1353260 Archaea Archaea 83.2 7.3e-17   NR WP_196817606.1 1353260 g22267 i0 51.7 3.79477611940298 89 41 97.4 1 264 4 46 134 WP_196817606.1 SDR family oxidoreductase [Candidatus Nitrosocosmicus oleophilus] diamond 1017 83.2 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
28227241 28227241 PRJNA1078753_P_NODE_24826_length_259_cov_1.521505_g24630_i0 PRJNA1078753 24826 259 1.521505 3.94069795 root 1 Root_unresolved Root_unresolved 47.4 0.00104   NR MEP0826501.1 1971748 g24630 i0 47.9 1.5984555984556 48 22 55.6 1 258 115 280 324 MEP0826501.1 lamin tail domain-containing protein [Nitrososphaera sp.] diamond 414 47.4 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Nitrososphaera Nitrososphaera sp.
28227242 28227242 PRJNA1078753_P_NODE_25466_length_256_cov_1.683060_g25270_i0 PRJNA1078753 25466 256 1.68306 4.3086336 Archaea 2157 Archaea Archaea 42.7 0.0419   NR NSL75859.1 2026795 g25270 i0 40.7 1.265625 54 29 63.3 1 201 40 14 64 NSL75859.1 isocitrate/isopropylmalate dehydrogenase family protein [Nitrososphaerota archaeon] diamond 324 42.7 1 Archaea   Thermoproteati Nitrososphaerota         Nitrososphaerota archaeon
28574778 28574778 PRJNA1078753_P_NODE_7927_length_387_cov_2.550955_g7731_i0 PRJNA1078753 7927 387 2.550955 9.87219585 root 1 Root_unresolved Root_unresolved 56.6 2.35e-6   NR WP_048106269.1 1410606 g7731 i0 42.3 4.78294573643411 71 39 55 1 379 167 339 407 WP_048106269.1 ammonium transporter [Candidatus Nitrosopelagicus brevis] diamond 1851 56.6 1 Archaea   Thermoproteati Nitrososphaerota       Candidatus Nitrosopelagicus Candidatus Nitrosopelagicus brevis
29309502 29309502 PRJNA1078753_P_NODE_20109_length_278_cov_1.278049_g19913_i0 PRJNA1078753 20109 278 1.278049 3.55297622 Candidatus Nitrosotenuis sp. 2507556 Archaea Archaea 78.6 4.73e-15   NR HXE73538.1 2507556 g19913 i0 56.6 0.89568345323741 83 28 80.9 2 13 237 167 249 HXE73538.1 orotidine-5'-phosphate decarboxylase [Candidatus Nitrosotenuis sp.] diamond 249 78.6 1 Archaea   Thermoproteati Nitrososphaerota       Candidatus Nitrosotenuis Candidatus Nitrosotenuis sp.
29878046 29878046 PRJNA1078753_P_NODE_28231_length_251_cov_0.865169_g28035_i0 PRJNA1078753 28231 251 0.865169 2.17157419 Nitrososphaerales archaeon 2268197 Archaea Archaea 45.4 0.00467   NR MEM3097430.1 2268197 g28035 i0 36.7 0.944223107569721 79 37 87.3 3 33 251 377 448 MEM3097430.1 hypothetical protein [Nitrososphaerales archaeon] diamond 237 45.4 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales     Nitrososphaerales archaeon
30193738 30193738 PRJNA1078753_P_NODE_36552_length_245_cov_0.895349_g36356_i0 PRJNA1078753 36552 245 0.895349 2.19360505 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 50.8 4.56e-5   NR NOJ29761.1 2169593 g36356 i0 53.3 0.551020408163265 45 19 52.7 1 92 220 51 95 NOJ29761.1 ion transporter [Nitrososphaeraceae archaeon] diamond 135 50.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;