RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1078753" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1078753 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29309508 29309508 PRJNA1078753_P_NODE_28129_length_251_cov_0.865169_g27933_i0 PRJNA1078753 28129 251 0.865169 2.17157419 Fibrobacterota bacterium 2052160 Bacteria Bacteria 49.3 2.01e-4   NR HAJ79001.1 2052160 g27933 i0 36.8 1.85258964143426 76 47 90.8 1 7 234 514 588 HAJ79001.1 hypothetical protein [Fibrobacterota bacterium] diamond 465 49.3 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
29719761 29719761 PRJNA1078753_P_NODE_40670_length_243_cov_0.870588_g40474_i0 PRJNA1078753 40670 243 0.870588 2.11552884 Fibrobacter sp. 35828 Bacteria Bacteria 62 6.22e-9   NR NLL12567.1 35828 g40474 i0 39.5 2.85185185185185 76 45 92.6 1 13 237 572 647 NLL12567.1 hypothetical protein [Fibrobacter sp.] diamond 693 62 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
30067403 30067403 PRJNA1078753_P_NODE_36472_length_245_cov_0.895349_g36276_i0 PRJNA1078753 36472 245 0.895349 2.19360505 Chitinispirillaceae bacterium 2813024 Bacteria Bacteria 46.6 3.89e-4   NR HMA66026.1 2813024 g36276 i0 29.7 0.783673469387755 64 45 78.4 0 49 240 1 64 HMA66026.1 phenylpyruvate tautomerase MIF-related protein [Chitinispirillaceae bacterium] diamond 192 46.6 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinispirillia Chitinispirillales Chitinispirillaceae   Chitinispirillaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;