RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1078753", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 5 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 5 ✖

bioproject 1

  • PRJNA1078753 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14221236 14221236 PRJNA1078753_P_NODE_22892_length_267_cov_1.237113_g22696_i0 PRJNA1078753 22892 267 1.237113 3.30309171 Bacteria 2 Bacteria Bacteria 110 7.5e-27   NR QSH42204.1 1932692 g22696 i0 60 9.19101123595506 90 33 97.8 1 262 2 125 214 QSH42204.1 GTPase ObgE [Lentisphaerota bacterium] diamond 2454 110 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
30635988 30635988 PRJNA1078753_P_NODE_17893_length_287_cov_1.570093_g17697_i0 PRJNA1078753 17893 287 1.570093 4.50616691 Lentisphaeria bacterium 2053569 Bacteria Bacteria 70.9 4.53e-12   NR MBR6240713.1 2053569 g17697 i0 46.3 2.50871080139373 67 35 70 1 86 286 160 225 MBR6240713.1 ion transporter [Lentisphaeria bacterium] diamond 720 70.9 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
31299744 31299744 PRJNA1078753_P_NODE_12035_length_333_cov_1.180769_g11839_i0 PRJNA1078753 12035 333 1.180769 3.93196077 Lentisphaerota bacterium 1932692 Bacteria Bacteria 90.9 2.46e-19   NR NLE43017.1 1932692 g11839 i0 48.8 0.756756756756757 84 42 74.8 1 82 330 3 86 NLE43017.1 redoxin domain-containing protein [Lentisphaerota bacterium] diamond 252 90.9 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
31639036 31639036 PRJNA1078753_P_NODE_1336_length_828_cov_1.311258_g1177_i0 PRJNA1078753 1336 828 1.311258 10.85721624 Pseudomonadati 3379134 Bacteria Bacteria 113 7.7e-26   NR MBN1865604.1 2212475 g1177 i0 33.5 2.08333333333333 227 130 80.4 5 131 796 31 241 MBN1865604.1 methyltransferase domain-containing protein [Victivallales bacterium] diamond 1725 113 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium
32375502 32375502 PRJNA1078753_P_NODE_29539_length_250_cov_0.870056_g29343_i0 PRJNA1078753 29539 250 0.870056 2.17514 Victivallales bacterium 2212475 Bacteria Bacteria 42.4 0.049   NR MBT7301618.1 2212475 g29343 i0 38.6 0.528 44 27 52.8 0 170 39 177 220 MBT7301618.1 sugar phosphate isomerase/epimerase [Victivallales bacterium] diamond 132 42.4 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;