RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1078753", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1078753 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29846355 29846355 PRJNA1078753_P_NODE_42531_length_241_cov_0.916667_g42335_i0 PRJNA1078753 42531 241 0.916667 2.20916747 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 112 1.16e-26   NR MBI3996703.1 2035772 g42335 i0 68.8 0.95850622406639 77 23 95.9 1 232 2 6947 7022 MBI3996703.1 phosphoglycerate kinase [Candidatus Omnitrophota bacterium] diamond 231 112 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
32177166 32177166 PRJNA1078753_P_NODE_20918_length_274_cov_2.592040_g20722_i0 PRJNA1078753 20918 274 2.59204 7.1021896 Bacteria 2 Bacteria Bacteria 43.1 0.0147   NR MBI4368039.1 2035772 g20722 i0 41.2 2.75912408759124 34 20 37.2 0 272 171 54 87 MBI4368039.1 septation protein SpoVG family protein [Candidatus Omnitrophota bacterium] diamond 756 43.5 0.990804597701149 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;