RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1078753", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 3 ✖

bioproject 1

  • PRJNA1078753 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10395897 10395897 PRJNA1078753_P_NODE_32109_length_248_cov_0.880000_g31913_i0 PRJNA1078753 32109 248 0.88 2.1824 Methanococcus voltae 2188 Archaea Archaea 56.5 0.002   NTclustered gi|2891705001|gb|CP178160.1| 523842 g31913 i0 97.059 0.42741935483871 34 0 13 1 170 202 191348 191381 Methanococcus voltae PS chromosome, complete genome blastn 106 56.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus voltae
27446947 27446947 PRJNA1078753_P_NODE_35343_length_246_cov_0.890173_g35147_i0 PRJNA1078753 35343 246 0.890173 2.18982558 Methanobrevibacter sp. 66852 Archaea Archaea 42.7 0.0392   NR WP_292800363.1 66852 g35147 i0 34.1 1 82 52 98.8 2 2 244 769 849 WP_292800363.1 hypothetical protein [Methanobrevibacter sp.] diamond 246 42.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
32375517 32375517 PRJNA1078753_P_NODE_839_length_1008_cov_1.459893_g702_i0 PRJNA1078753 839 1008 1.459893 14.71572144 Methanobrevibacter millerae 230361 Archaea Archaea 55.1 3.77e-4   NR WP_303737944.1 230361 g702 i0 31.4 0.50297619047619 169 94 47.9 7 925 443 884 1038 WP_303737944.1 hypothetical protein, partial [Methanobrevibacter millerae] diamond 507 55.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;