RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA1078753", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 10 ✖

tax_clade 1

  • Metamonada · 10 ✖

bioproject 1

  • PRJNA1078753 · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19318170 19318170 PRJNA1078753_P_NODE_15316_length_304_cov_1.272727_g15120_i0 PRJNA1078753 15316 304 1.272727 3.86909008 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 56.5 0.002   NTclustered gi|2806457882|ref|XM_068492248.1| 1144522 g15120 i0 100 0.703947368421053 30 0 10 0 170 199 768 797 Tritrichomonas foetus uncharacterized protein (TRFO_05031), partial mRNA blastn 214 56.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
21869223 21869223 PRJNA1078753_P_NODE_12318_length_330_cov_1.198444_g12122_i0 PRJNA1078753 12318 330 1.198444 3.9548652 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 63.9 1.44e-5   NTclustered gi|2806467651|ref|XM_068506877.1| 1144522 g12122 i0 97.297 2.07272727272727 37 1 11 0 291 327 509 473 Tritrichomonas foetus uncharacterized protein (TRFO_29613), partial mRNA blastn 684 63.9 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
26718918 26718918 PRJNA1078753_P_NODE_9641_length_360_cov_2.425087_g9445_i0 PRJNA1078753 9641 360 2.425087 8.7303132 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 62.4 6.33e-9   NR XP_068365189.1 1144522 g9445 i0 44.4 1.04166666666667 63 35 52.5 0 19 207 152 214 XP_068365189.1 uncharacterized protein TRFO_18246 [Tritrichomonas foetus] diamond 375 62.4 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
28330692 28330692 PRJNA1078753_P_NODE_27986_length_251_cov_0.865169_g27790_i0 PRJNA1078753 27986 251 0.865169 2.17157419 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 60.8 1.72e-8   NR XP_068361823.1 1144522 g27790 i0 41.2 2.46215139442231 68 38 81.3 2 1 204 351 416 XP_068361823.1 TKL family protein kinase [Tritrichomonas foetus] diamond 618 60.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
28795639 28795639 PRJNA1078753_P_NODE_25587_length_256_cov_1.300546_g25391_i0 PRJNA1078753 25587 256 1.300546 3.32939776 Tritrichomonadida 740972 Parabasalia other_Eukaryota 75.5 1.1e-13   NR XP_067773451.1 135588 g25391 i0 38.6 1.91015625 83 51 97.3 0 254 6 14 96 XP_067773451.1 C2 domain containing protein [Histomonas meleagridis] diamond 489 75.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
29120336 29120336 PRJNA1078753_P_NODE_18689_length_284_cov_1.341232_g18493_i0 PRJNA1078753 18689 284 1.341232 3.80909888 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 96.3 9.510000000000002e-21   NR XP_068365916.1 1144522 g18493 i0 62.5 0.76056338028169 72 25 76.1 1 218 3 134 203 XP_068365916.1 leucyl-tRNA synthetase [Tritrichomonas foetus] diamond 216 96.3 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
29941272 29941272 PRJNA1078753_P_NODE_16291_length_297_cov_0.991071_g16095_i0 PRJNA1078753 16291 297 0.991071 2.94348087 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 77 6.78e-15   NR XP_068348448.1 1144522 g16095 i0 48.8 4.7979797979798 84 41 83.8 2 296 48 92 174 XP_068348448.1 small GTP-binding protein [Tritrichomonas foetus] diamond 1425 77 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
30121965 30121965 PRJNA1078753_P_NODE_19152_length_282_cov_1.272727_g18956_i0 PRJNA1078753 19152 282 1.272727 3.58909014 root 1 Root_unresolved Root_unresolved 58.5 8.13e-8   NR XP_001302660.1 412133 g18956 i0 43.3 3.64893617021277 60 34 63.8 0 190 11 111 170 XP_001302660.1 protein serine/threonine kinase protein [Trichomonas vaginalis G3] diamond 1029 58.5 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
30857292 30857292 PRJNA1078753_P_NODE_28094_length_251_cov_0.865169_g27898_i0 PRJNA1078753 28094 251 0.865169 2.17157419 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 60.5 1.73e-8   NR XP_068367327.1 1144522 g27898 i0 45.2 1.00398406374502 84 40 99.2 3 250 2 33 111 XP_068367327.1 uncharacterized protein TRFO_15477 [Tritrichomonas foetus] diamond 252 60.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
32153929 32153929 PRJNA1078753_P_NODE_19718_length_279_cov_2.990291_g19522_i0 PRJNA1078753 19718 279 2.990291 8.34291189 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 53.5 8.71e-6   NR XP_067777116.1 135588 g19522 i0 45.7 0.494623655913978 46 25 49.5 0 267 130 225 270 XP_067777116.1 CAMK family protein kinase [Histomonas meleagridis] diamond 138 53.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;