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contig_metadata

26 rows where bioproject = "PRJNA1078753", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 26 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 26 ✖

bioproject 1

  • PRJNA1078753 · 26 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1467235 1467235 PRJNA1078753_P_NODE_39922_length_243_cov_0.905882_g39726_i0 PRJNA1078753 39922 243 0.905882 2.20129326 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 140 6.539999999999999e-37   NR HYD51601.1 2026741 g39726 i0 82.3 0.975308641975309 79 14 97.5 0 2 238 173 251 HYD51601.1 sodium:solute symporter [Gemmatimonadaceae bacterium] diamond 237 140 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
2743285 2743285 PRJNA1078753_P_NODE_30923_length_249_cov_0.875000_g30727_i0 PRJNA1078753 30923 249 0.875 2.17875 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 145 3.61e-30   NTclustered gi|575456455|gb|CP007128.1| 861299 g30727 i0 78.632 1.17269076305221 234 39 92 7 1 228 5051843 5052071 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 292 145 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
5295276 5295276 PRJNA1078753_P_NODE_1725_length_737_cov_2.001506_g1549_i0 PRJNA1078753 1725 737 2.001506 14.75109922 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 891 0   NTclustered gi|575456455|gb|CP007128.1| 861299 g1549 i0 88.636 179.712347354138 748 64 100 17 1 737 3042360 3043097 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 132448 891 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
6570420 6570420 PRJNA1078753_P_NODE_18606_length_284_cov_1.886256_g18410_i0 PRJNA1078753 18606 284 1.886256 5.35696704 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 291 5.1000000000000005e-74   NTclustered gi|2874253789|emb|OY969773.1| 412054 g18410 i0 85.614 3 285 32 99 9 4 284 602580 602301 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 852 291 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
7845114 7845114 PRJNA1078753_P_NODE_12207_length_331_cov_1.406977_g12011_i0 PRJNA1078753 12207 331 1.406977 4.65709387 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 403 7.47e-108   NTclustered gi|575456455|gb|CP007128.1| 861299 g12011 i0 89.058 95.0574018126888 329 31 99 5 4 331 3042535 3042859 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 31464 403 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
7845185 7845185 PRJNA1078753_P_NODE_22427_length_269_cov_0.857143_g22231_i0 PRJNA1078753 22427 269 0.857143 2.30571467 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 381 2.7699999999999995e-101   NTclustered gi|2874253789|emb|OY969773.1| 412054 g22231 i0 92.251 236.490706319703 271 17 100 4 1 269 421359 421627 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 63616 381 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
7845193 7845193 PRJNA1078753_P_NODE_23287_length_265_cov_1.598958_g23091_i0 PRJNA1078753 23287 265 1.598958 4.2372387 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 82 7.14e-16   NR MDB4909668.1 2026742 g23091 i0 64.7 6.11320754716981 51 18 57.7 0 112 264 124 174 MDB4909668.1 hypothetical protein [Gemmatimonadota bacterium] diamond 1620 82 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
14221317 14221317 PRJNA1078753_P_NODE_31692_length_248_cov_0.880000_g31496_i0 PRJNA1078753 31692 248 0.88 2.1824 Bacteria 2 Bacteria Bacteria 119 1.53e-29   NR HEY0997550.1 2026741 g31496 i0 64.6 2.92741935483871 79 28 95.6 0 11 247 163 241 HEY0997550.1 pectate lyase [Gemmatimonadaceae bacterium] diamond 726 120 0.991666666666667 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
26592416 26592416 PRJNA1078753_P_NODE_43181_length_241_cov_0.916667_g42985_i0 PRJNA1078753 43181 241 0.916667 2.20916747 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 91.3 1.02e-21   NR MDE2723922.1 2026742 g42985 i0 64.1 0.970954356846473 78 28 97.1 0 236 3 3 80 MDE2723922.1 6-phosphogluconolactonase [Gemmatimonadota bacterium] diamond 234 91.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27162040 27162040 PRJNA1078753_P_NODE_29062_length_250_cov_0.870056_g28866_i0 PRJNA1078753 29062 250 0.870056 2.17514 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 44.3 0.0118   NR HEY7505435.1 2448054 g28866 i0 35.8 0.804 67 43 80.4 0 22 222 612 678 HEY7505435.1 prolyl oligopeptidase family serine peptidase [Gemmatimonadales bacterium] diamond 201 44.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
27320417 27320417 PRJNA1078753_P_NODE_29243_length_250_cov_0.870056_g29047_i0 PRJNA1078753 29243 250 0.870056 2.17514 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 124 7.229999999999999e-31   NR HEY0994489.1 2026741 g29047 i0 74.4 0.984 82 18 98.4 1 248 3 246 324 HEY0994489.1 M20/M25/M40 family metallo-hydrolase [Gemmatimonadaceae bacterium] diamond 246 124 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27604757 27604757 PRJNA1078753_P_NODE_5244_length_460_cov_2.023256_g5048_i0 PRJNA1078753 5244 460 2.023256 9.3069776 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 50.8 4.1e-4   NR MBW3654483.1 2026742 g5048 i0 41.3 0.410869565217391 63 36 40.4 1 10 195 229 291 MBW3654483.1 DUF1929 domain-containing protein [Gemmatimonadota bacterium] diamond 189 50.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28574772 28574772 PRJNA1078753_P_NODE_28047_length_251_cov_0.865169_g27851_i0 PRJNA1078753 28047 251 0.865169 2.17157419 Gemmatimonadaceae 219687 Bacteria Bacteria 102 3.55e-26   NR MBC7896499.1 2026741 g27851 i0 63.6 2.7609561752988 77 15 92 1 3 233 26 89 MBC7896499.1 DUF839 domain-containing protein [Gemmatimonadaceae bacterium] diamond 693 102 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28890441 28890441 PRJNA1078753_P_NODE_28308_length_250_cov_1.740113_g28112_i0 PRJNA1078753 28308 250 1.740113 4.3502825 Pseudomonadati 3379134 Bacteria Bacteria 55.1 1.64e-6   NR MBT8479788.1 2026742 g28112 i0 61.5 8.16 39 15 46.8 0 120 4 2 40 MBT8479788.1 ribonuclease Z [Gemmatimonadota bacterium] diamond 2040 55.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29372734 29372734 PRJNA1078753_P_NODE_20809_length_275_cov_1.341584_g20613_i0 PRJNA1078753 20809 275 1.341584 3.689356 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 171 1.3e-49   NR HTR22189.1 2448054 g20613 i0 93.4 0.992727272727273 91 6 99.3 0 274 2 107 197 HTR22189.1 cystathionine gamma-synthase [Gemmatimonadales bacterium] diamond 273 171 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
29806071 29806071 PRJNA1078753_P_NODE_26531_length_252_cov_1.720670_g26335_i0 PRJNA1078753 26531 252 1.72067 4.3360884 Bacteria 2 Bacteria Bacteria 104 8.769999999999998e-24   NR MDX1393547.1 2026742 g26335 i0 57.8 11.6785714285714 83 35 98.8 0 250 2 726 808 MDX1393547.1 serine hydrolase [Gemmatimonadota bacterium] diamond 2943 105 0.990476190476191 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29846351 29846351 PRJNA1078753_P_NODE_38391_length_244_cov_0.900585_g38195_i0 PRJNA1078753 38391 244 0.900585 2.1974274 Gemmatimonadetes bacterium T265 2839016 Bacteria Bacteria 57.4 3.47e-8   NR GJG88251.1 2839016 g38195 i0 48.3 1.42622950819672 58 29 71.3 1 239 66 76 132 GJG88251.1 hypothetical protein tb265_34320 [Gemmatimonadetes bacterium T265] diamond 348 57.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadetes bacterium T265
29972681 29972681 PRJNA1078753_P_NODE_7951_length_387_cov_1.445860_g7755_i0 PRJNA1078753 7951 387 1.44586 5.5954782 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 109 2.1e-27   NR HKP30391.1 2448054 g7755 i0 47.6 5.81395348837209 124 56 94.6 4 385 20 50 166 HKP30391.1 3-hydroxyanthranilate 3,4-dioxygenase [Gemmatimonadales bacterium] diamond 2250 109 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30216801 30216801 PRJNA1078753_P_NODE_43112_length_241_cov_0.916667_g42916_i0 PRJNA1078753 43112 241 0.916667 2.20916747 Pseudomonadati 3379134 Bacteria Bacteria 59.7 4.69e-9   NR HWZ58692.1 2026741 g42916 i0 51.8 1.34439834024896 56 27 69.7 0 239 72 82 137 HWZ58692.1 hotdog fold domain-containing protein [Gemmatimonadaceae bacterium] diamond 324 60.1 0.993344425956739 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31639039 31639039 PRJNA1078753_P_NODE_23176_length_266_cov_1.196891_g22980_i0 PRJNA1078753 23176 266 1.196891 3.18373006 Pseudomonadati 3379134 Bacteria Bacteria 77 9.17e-15   NR MBI4545747.1 2026742 g22980 i0 51.2 9.47368421052632 82 34 92.5 2 11 256 115 190 MBI4545747.1 1-acyl-sn-glycerol-3-phosphate acyltransferase [Gemmatimonadota bacterium] diamond 2520 77.4 0.994832041343669 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31711025 31711025 PRJNA1078753_P_NODE_9897_length_357_cov_1.218310_g9701_i0 PRJNA1078753 9897 357 1.21831 4.3493667 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 104 1.4000000000000002e-23   NR MBA3579866.1 2026741 g9701 i0 51.3 3.9327731092437 117 51 98.3 1 5 355 309 419 MBA3579866.1 M20/M25/M40 family metallo-hydrolase [Gemmatimonadaceae bacterium] diamond 1404 104 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31765635 31765635 PRJNA1078753_P_NODE_3877_length_521_cov_1.716518_g3683_i0 PRJNA1078753 3877 521 1.716518 8.94305878 FCB group 1783270 Bacteria Bacteria 115 1.5e-27   NR HEY9517787.1 2448054 g3683 i0 37.6 3.00575815738964 173 105 98.5 2 5 517 122 293 HEY9517787.1 TIGR01777 family oxidoreductase [Gemmatimonadales bacterium] diamond 1566 116 0.991379310344828 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32659443 32659443 PRJNA1078753_P_NODE_36580_length_245_cov_0.895349_g36384_i0 PRJNA1078753 36580 245 0.895349 2.19360505 Roseisolibacter agri 2014610 Bacteria Bacteria 127 4.6999999999999996e-32   NR WP_284350504.1 2014610 g36384 i0 84.8 0.96734693877551 79 12 96.7 0 244 8 124 202 WP_284350504.1 SusC/RagA family TonB-linked outer membrane protein [Roseisolibacter agri] diamond 237 127 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Roseisolibacter Roseisolibacter agri
32691029 32691029 PRJNA1078753_P_NODE_25780_length_255_cov_1.560440_g25584_i0 PRJNA1078753 25780 255 1.56044 3.979122 Roseisolibacter agri 2014610 Bacteria Bacteria 68.9 2.45e-11   NR WP_284348335.1 2014610 g25584 i0 60.3 0.858823529411765 73 25 85.9 2 247 29 371 439 WP_284348335.1 1-acyl-sn-glycerol-3-phosphate acyltransferase [Roseisolibacter agri] diamond 219 68.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Roseisolibacter Roseisolibacter agri
32754143 32754143 PRJNA1078753_P_NODE_24600_length_260_cov_1.459893_g24404_i0 PRJNA1078753 24600 260 1.459893 3.7957218 Gemmatirosa sp. 2510638 Bacteria Bacteria 118 8.98e-30   NR HZF67704.1 2510638 g24404 i0 72.1 2.88461538461538 86 23 99.2 1 1 258 101 185 HZF67704.1 hypothetical protein [Gemmatirosa sp.] diamond 750 118 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa sp.
32785507 32785507 PRJNA1078753_P_NODE_28800_length_250_cov_0.870056_g28604_i0 PRJNA1078753 28800 250 0.870056 2.17514 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 109 1.08e-25   NR MBK36861.1 2026742 g28604 i0 57.8 0.996 83 35 99.6 0 1 249 181 263 MBK36861.1 hypothetical protein [Gemmatimonadota bacterium] diamond 249 109 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;