RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1078753", tax_clade = "FCB group" and tax_phylum = "Balneolota"

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tax_superkingdom 1

tax_phylum 1

  • Balneolota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA1078753 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28795641 28795641 PRJNA1078753_P_NODE_31907_length_248_cov_0.880000_g31711_i0 PRJNA1078753 31907 248 0.88 2.1824 Pseudomonadati 3379134 Bacteria Bacteria 53.1 8.39e-6   NR WP_109647115.1 2079485 g31711 i0 53.8 3.09677419354839 39 18 47.2 0 149 33 306 344 WP_109647115.1 serine hydrolase domain-containing protein [Rhodohalobacter mucosus] diamond 768 53.1 1 Bacteria FCB group Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae Rhodohalobacter Rhodohalobacter mucosus
31078691 31078691 PRJNA1078753_P_NODE_42415_length_241_cov_1.375000_g42219_i0 PRJNA1078753 42415 241 1.375 3.31375 Balneolaceae bacterium 2053516 Bacteria Bacteria 65.1 4.65e-10   NR TVQ69883.1 2053516 g42219 i0 40 0.995850622406639 80 43 98.3 3 3 239 364 439 TVQ69883.1 MAG: T9SS C-terminal target domain-containing protein [Balneolaceae bacterium] diamond 240 65.1 1 Bacteria FCB group Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae   Balneolaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;