RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1078753", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Minisyncoccota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA1078753 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27667865 27667865 PRJNA1078753_P_NODE_27624_length_251_cov_0.865169_g27428_i0 PRJNA1078753 27624 251 0.865169 2.17157419 Minisyncoccota bacterium 2053589 Bacteria Bacteria 43.1 0.0261   NR MFA6896283.1 2053589 g27428 i0 40.8 0.585657370517928 49 29 58.6 0 12 158 188 236 MFA6896283.1 NUDIX domain-containing protein [Candidatus Paceibacterota bacterium] diamond 147 43.1 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
28204257 28204257 PRJNA1078753_P_NODE_19726_length_279_cov_2.242718_g19530_i0 PRJNA1078753 19726 279 2.242718 6.25718322 Minisyncoccota bacterium 2053589 Bacteria Bacteria 53.9 6.42e-6   NR MFA6414676.1 2053589 g19530 i0 61.2 1.96774193548387 49 16 51.6 2 134 277 2 48 MFA6414676.1 saccharopine dehydrogenase C-terminal domain-containing protein [Candidatus Paceibacterota bacterium] diamond 549 53.9 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
30320783 30320783 PRJNA1078753_P_NODE_6192_length_429_cov_1.730337_g5996_i0 PRJNA1078753 6192 429 1.730337 7.42314573 Minisyncoccota bacterium 2053589 Bacteria Bacteria 67.4 6.05e-10   NR MBP7805140.1 2053589 g5996 i0 66 2.18181818181818 50 17 35 0 280 429 3 52 MBP7805140.1 SulP family inorganic anion transporter [Candidatus Paceibacterota bacterium] diamond 936 67.4 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;