RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA1074408" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 10 ✖

bioproject 1

  • PRJNA1074408 · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
190997 190997 PRJNA1074408_S_NODE_2401_length_295_cov_6.571429_g2271_i0 PRJNA1074408 2401 295 6.571429 19.38571555 Jujube closterovirus 1 3043313 Viruses Viruses 56.5 0.002   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g2271 i0 100 0.196610169491525 30 0 10 0 266 295 35 6 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 58 56.5 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
1465576 1465576 PRJNA1074408_S_NODE_1242_length_404_cov_7.454294_g1112_i0 PRJNA1074408 1242 404 7.454294 30.11534776 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 652 0   NTclustered gi|2551699335|gb|OK619588.1| 3063761 g1112 i0 95.771 0.995049504950495 402 17 99 0 1 402 6654 7055 Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds blastn 402 652 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Danio blood picornavirus/Zebrafish picornavirus 2
4017544 4017544 PRJNA1074408_S_NODE_8684_length_160_cov_1.230769_g8554_i0 PRJNA1074408 8684 160 1.230769 1.9692304 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 263 5.629999999999999e-66   NTclustered gi|2551699335|gb|OK619588.1| 3063761 g8554 i0 96.25 1 160 6 100 0 1 160 2284 2443 Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds blastn 160 263 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Danio blood picornavirus/Zebrafish picornavirus 2
11669667 11669667 PRJNA1074408_S_NODE_5530_length_197_cov_1.870130_g5400_i0 PRJNA1074408 5530 197 1.87013 3.6841561 Caudoviricetes sp. 2832643 Viruses Viruses 359 8.98e-95   NTclustered gi|2057146744|tpg|BK058424.1| 2832643 g5400 i0 99.492 4.57868020304569 197 1 100 0 1 197 1390 1586 MAG TPA_asm: Caudoviricetes sp. isolate ctU2V15, partial genome blastn 902 359 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
16767926 16767926 PRJNA1074408_S_NODE_1854_length_333_cov_3.582759_g1724_i0 PRJNA1074408 1854 333 3.582759 11.93058747 Zebrafish picornavirus 1 2304617 Viruses Viruses 582 8.999999999999997e-162   NTclustered gi|1812398529|gb|MN524064.1| 2304617 g1724 i0 98.198 4.54054054054054 333 6 100 0 1 333 7840 8172 Zebrafish picornavirus 1 isolate CZAR/ZfPV/2018/Utah/USA, complete genome blastn 1512 582 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Zebrafish picornavirus 1
16767949 16767949 PRJNA1074408_S_NODE_7454_length_172_cov_1.116279_g7324_i0 PRJNA1074408 7454 172 1.116279 1.91999988 Pestivirus bovis 3052619 Viruses Viruses 196 6.3e-46   NTclustered gi|2127986378|gb|MW054934.1| 11099 g7324 i0 87.647 9.73255813953488 170 19 98 2 1 169 811 643 Bovine viral diarrhea virus 1 strain LA/87/05, complete genome blastn 1674 196 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
18042735 18042735 PRJNA1074408_S_NODE_9775_length_152_cov_0.880734_g9645_i0 PRJNA1074408 9775 152 0.880734 1.33871568 Chronazanb virus 3129852 Viruses Viruses 119 1.21e-22   NTclustered gi|2717318485|gb|PP172249.1| 3129852 g9645 i0 94.737 7.72368421052632 76 4 50 0 77 152 4398 4473 MAG: Chronazanb virus isolate CN1B_k141_35798 genomic sequence blastn 1174 119 1 Viruses   Orthornavirae Lenarviricota Leviviricetes       Chronazanb virus
18868102 18868102 PRJNA1074408_S_NODE_2395_length_295_cov_1009.746032_g2265_i0 PRJNA1074408 2395 295 1009.746032 2978.7507944 root 1 Root_unresolved Root_unresolved 122 2.06e-23   NTclustered gi|1893169343|gb|MT364888.1| 10310 g2265 i0 94.937 24.335593220339 79 2 27 2 11 89 4 80 Human alphaherpesvirus 2, partial genome blastn 7179 122 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Simplexvirus Simplexvirus humanalpha2
21867795 21867795 PRJNA1074408_S_NODE_5178_length_203_cov_1.768750_g5048_i0 PRJNA1074408 5178 203 1.76875 3.5905625 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 279 7.45e-71   NTclustered gi|2551699335|gb|OK619588.1| 3063761 g5048 i0 91.542 0.990147783251232 201 16 99 1 1 201 6766 6965 Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds blastn 201 279 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Danio blood picornavirus/Zebrafish picornavirus 2
30762625 30762625 PRJNA1074408_S_NODE_6534_length_182_cov_1.726619_g6404_i0 PRJNA1074408 6534 182 1.726619 3.14244658 Erythrocytic necrosis virus 1543320 Viruses Viruses 49.3 1.55e-5   NR QCF47486.1 1543320 g6404 i0 56.9 1.68131868131868 51 21 84.1 1 180 28 45 94 QCF47486.1 putative RNA-dependent DNA polymerase, partial [Erythrocytic necrosis virus] diamond 306 49.7 0.991951710261569 Viruses   Bamfordvirae Nucleocytoviricota Megaviricetes Pimascovirales Iridoviridae   Erythrocytic necrosis virus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;