RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1074408", tax_phylum = "Pisuviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 4 ✖

tax_phylum 1

  • Pisuviricota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1074408 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1465576 1465576 PRJNA1074408_S_NODE_1242_length_404_cov_7.454294_g1112_i0 PRJNA1074408 1242 404 7.454294 30.11534776 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 652 0   NTclustered gi|2551699335|gb|OK619588.1| 3063761 g1112 i0 95.771 0.995049504950495 402 17 99 0 1 402 6654 7055 Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds blastn 402 652 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Danio blood picornavirus/Zebrafish picornavirus 2
4017544 4017544 PRJNA1074408_S_NODE_8684_length_160_cov_1.230769_g8554_i0 PRJNA1074408 8684 160 1.230769 1.9692304 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 263 5.629999999999999e-66   NTclustered gi|2551699335|gb|OK619588.1| 3063761 g8554 i0 96.25 1 160 6 100 0 1 160 2284 2443 Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds blastn 160 263 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Danio blood picornavirus/Zebrafish picornavirus 2
16767926 16767926 PRJNA1074408_S_NODE_1854_length_333_cov_3.582759_g1724_i0 PRJNA1074408 1854 333 3.582759 11.93058747 Zebrafish picornavirus 1 2304617 Viruses Viruses 582 8.999999999999997e-162   NTclustered gi|1812398529|gb|MN524064.1| 2304617 g1724 i0 98.198 4.54054054054054 333 6 100 0 1 333 7840 8172 Zebrafish picornavirus 1 isolate CZAR/ZfPV/2018/Utah/USA, complete genome blastn 1512 582 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Zebrafish picornavirus 1
21867795 21867795 PRJNA1074408_S_NODE_5178_length_203_cov_1.768750_g5048_i0 PRJNA1074408 5178 203 1.76875 3.5905625 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 279 7.45e-71   NTclustered gi|2551699335|gb|OK619588.1| 3063761 g5048 i0 91.542 0.990147783251232 201 16 99 1 1 201 6766 6965 Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds blastn 201 279 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Danio blood picornavirus/Zebrafish picornavirus 2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;