RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA1074408" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1074408 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11669654 11669654 PRJNA1074408_S_NODE_1670_length_351_cov_5.298701_g1540_i0 PRJNA1074408 1670 351 5.298701 18.59844051 Capillaria sp. ALS-2019 2651741 Nematoda Nematoda 161 5.28e-35   NTclustered gi|1811126246|gb|MN526255.1| 2651741 g1540 i0 91.525 19.7749287749288 118 9 33 1 235 351 343 226 Capillaria sp. ALS-2019 large subunit ribosomal RNA gene, partial sequence blastn 6941 161 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Capillaria Capillaria sp. ALS-2019
13769846 13769846 PRJNA1074408_S_NODE_5431_length_198_cov_12.096774_g5301_i0 PRJNA1074408 5431 198 12.096774 23.95161252 root 1 Root_unresolved Root_unresolved 200 5.79e-47   NTclustered gi|2130729776|gb|OL416396.1| 73922 g5301 i0 84.925 133.80303030303 199 28 100 2 1 198 2971 2774 Paracanthonchus caecus isolate Pc-OVN-2021 large subunit ribosomal RNA gene, partial sequence blastn 26493 200 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Chromadorida Cyatholaimidae Paracanthonchus Paracanthonchus caecus
15493635 15493635 PRJNA1074408_S_NODE_2053_length_318_cov_8.072727_g1923_i0 PRJNA1074408 2053 318 8.072727 25.67127186 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 542 1.45e-149   NTclustered gi|1070586637|gb|KU987805.1| 1904821 g1923 i0 100 87.220125786163507 293 0 92 0 26 318 651 943 Pseudocapillaria tomentosa 18S ribosomal RNA gene, partial sequence blastn 27736 542 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
15493637 15493637 PRJNA1074408_S_NODE_2753_length_277_cov_1.846154_g2623_i0 PRJNA1074408 2753 277 1.846154 5.11384658 Aonchotheca paranalis 2025203 Nematoda Nematoda 363 1.0399999999999999e-95   NTclustered gi|1279640587|gb|MF621021.1| 2025203 g2623 i0 90.253 58.5776173285199 277 27 100 0 1 277 3883 3607 Aonchotheca paranalis isolate PL 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 16226 363 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Aonchotheca Aonchotheca paranalis
19316667 19316667 PRJNA1074408_S_NODE_5336_length_200_cov_1.528662_g5206_i0 PRJNA1074408 5336 200 1.528662 3.057324 Setostephanolaimus sp. OVN-2021 2893399 Nematoda Nematoda 230 7.479999999999998e-56   NTclustered gi|2130729779|gb|OL416399.1| 2893399 g5206 i0 87.379 42.365 206 19 100 5 1 200 2117 2321 Setostephanolaimus sp. OVN-2021 large subunit ribosomal RNA gene, partial sequence blastn 8473 230 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Plectida Camacolaimidae Setostephanolaimus Setostephanolaimus sp. OVN-2021
27352156 27352156 PRJNA1074408_S_NODE_8763_length_159_cov_1.655172_g8633_i0 PRJNA1074408 8763 159 1.655172 2.63172348 Trichuris trichiura 36087 Nematoda Nematoda 75.1 1.32e-14   NR CDW54364.1 36087 g8633 i0 55.1 0.924528301886792 49 22 92.5 0 159 13 170 218 CDW54364.1 26S proteasome non ATPase regulatory subunit 10 [Trichuris trichiura] diamond 147 75.1 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura
28109583 28109583 PRJNA1074408_S_NODE_7225_length_174_cov_2.198473_g7095_i0 PRJNA1074408 7225 174 2.198473 3.82534302 Soboliphyme baturini 241478 Nematoda Nematoda 97.1 2.85e-24   NR VDP04425.1 241478 g7095 i0 91.1 0.96551724137931 56 5 96.6 0 6 173 39 94 VDP04425.1 unnamed protein product [Soboliphyme baturini] diamond 168 97.1 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
28330672 28330672 PRJNA1074408_S_NODE_2346_length_299_cov_1.382812_g2216_i0 PRJNA1074408 2346 299 1.382812 4.13460788 Trichuris trichiura 36087 Nematoda Nematoda 132 4.22e-37   NR CDW53661.1 36087 g2216 i0 78.5 0.792642140468227 79 17 79.3 0 293 57 69 147 CDW53661.1 Heme transporter hrg1 B [Trichuris trichiura] diamond 237 132 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;