RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1074408" and tax_phylum = "Chytridiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1074408 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16767959 16767959 PRJNA1074408_S_NODE_8434_length_162_cov_1.613445_g8304_i0 PRJNA1074408 8434 162 1.613445 2.6137809 Wheelerophlyctis interiexterior 2249416 Fungi Fungi 182 1.6499999999999996e-41   NTclustered gi|1866582680|gb|MT730855.1| 2249416 g8304 i0 87.037 78.641975308642 162 19 100 2 1 162 4265 4106 Wheelerophlyctis interiexterior isolate JEL0857 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12740 182 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Asterophlyctaceae Wheelerophlyctis Wheelerophlyctis interiexterior
19316673 19316673 PRJNA1074408_S_NODE_6396_length_184_cov_1.609929_g6266_i0 PRJNA1074408 6396 184 1.609929 2.96226936 Fimicolochytrium jonesii 1396493 Fungi Fungi 54.7 0.004   NTclustered gi|2432071943|ref|XM_053071778.1| 1396493 g6266 i0 96.97 0.179347826086957 33 0 17 1 119 150 908 876 Fimicolochytrium jonesii S-adenosyl-L-methionine-dependent methyltransferase (EV422DRAFT_550495), partial mRNA blastn 33 54.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
31078651 31078651 PRJNA1074408_S_NODE_4215_length_226_cov_1.311475_g4085_i0 PRJNA1074408 4215 226 1.311475 2.9639335 Borealophlyctis nickersoniae 2735257 Fungi Fungi 68.6 1.84e-11   NR KAJ3296464.1 2735257 g4085 i0 51.9 1.02212389380531 77 34 98.2 1 224 3 221 297 KAJ3296464.1 methylglyoxal reductase (NADPH-dependent) gre2 [Borealophlyctis nickersoniae] diamond 231 68.6 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophlyctidales Borealophlyctidaceae Borealophlyctis Borealophlyctis nickersoniae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;