RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1074408", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1074408 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1016456 1016456 PRJNA1074408_S_NODE_841_length_475_cov_2.356481_g712_i0 PRJNA1074408 841 475 2.356481 11.19328475 Peredibacter 263370 Bacteria Bacteria 196 2.02e-45   NTclustered gi|2631252187|gb|CP139487.1| 28202 g712 i0 83.256 280.888421052632 215 34 45 2 248 461 512108 511895 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 133422 196 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
9944696 9944696 PRJNA1074408_S_NODE_728_length_502_cov_13.522876_g601_i0 PRJNA1074408 728 502 13.522876 67.88483752 Pigmentibacter 2838409 Bacteria Bacteria 71.3 1.35e-7   NTclustered gi|2651759839|dbj|AP029159.1| 2683196 g601 i0 83.333 2.63545816733068 78 11 15 2 180 255 507347 507424 Pigmentibacter ruber GTC16762 DNA, complete genome blastn 1323 71.3 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae Pigmentibacter Pigmentibacter ruber
16319034 16319034 PRJNA1074408_S_NODE_1313_length_395_cov_2.977273_g1183_i0 PRJNA1074408 1313 395 2.977273 11.76022835 Bdellovibrio 958 Bacteria Bacteria 348 4.31e-91   NTclustered gi|2800924434|gb|CP168967.1| 959 g1183 i0 82.878 98.1012658227848 403 53 100 15 1 395 784820 784426 Bdellovibrio bacteriovorus strain Bd4 chromosome, complete genome blastn 38750 348 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
30153437 30153437 PRJNA1074408_S_NODE_4352_length_222_cov_1.754190_g4222_i0 PRJNA1074408 4352 222 1.75419 3.8943018 Bacteria 2 Bacteria Bacteria 72 2.86e-13   NR WP_015470575.1 453816 g4222 i0 71.4 4.22972972972973 42 12 56.8 0 95 220 158 199 WP_015470575.1 PAQR family membrane homeostasis protein TrhA [Pseudobdellovibrio exovorus] diamond 939 72 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;