RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1074408", tax_kingdom = "Orthornavirae" and tax_phylum = "Kitrinoviricota"

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tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 2 ✖

tax_kingdom 1

  • Orthornavirae · 2 ✖

bioproject 1

  • PRJNA1074408 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
190997 190997 PRJNA1074408_S_NODE_2401_length_295_cov_6.571429_g2271_i0 PRJNA1074408 2401 295 6.571429 19.38571555 Jujube closterovirus 1 3043313 Viruses Viruses 56.5 0.002   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g2271 i0 100 0.196610169491525 30 0 10 0 266 295 35 6 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 58 56.5 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
16767949 16767949 PRJNA1074408_S_NODE_7454_length_172_cov_1.116279_g7324_i0 PRJNA1074408 7454 172 1.116279 1.91999988 Pestivirus bovis 3052619 Viruses Viruses 196 6.3e-46   NTclustered gi|2127986378|gb|MW054934.1| 11099 g7324 i0 87.647 9.73255813953488 170 19 98 2 1 169 811 643 Bovine viral diarrhea virus 1 strain LA/87/05, complete genome blastn 1674 196 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;