RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1074408" and tax_clade = "Haptista"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJNA1074408 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6568907 6568907 PRJNA1074408_S_NODE_2746_length_277_cov_3.427350_g2616_i0 PRJNA1074408 2746 277 3.42735 9.4937595 Meringosphaera mediterranea 2837474 Root_unresolved Root_unresolved 106 1.93e-18   NTclustered gi|2526806211|gb|OR195157.1| 2837474 g2616 i0 83.333 28.0685920577617 120 15 43 5 1 119 2824 2939 Meringosphaera mediterranea isolate S7 internal transcribed spacer 2 and large subunit ribosomal RNA gene, partial sequence blastn 7775 106 1 Eukaryota Haptista     Centroplasthelida     Meringosphaera Meringosphaera mediterranea
30857266 30857266 PRJNA1074408_S_NODE_9874_length_151_cov_1.509259_g9744_i0 PRJNA1074408 9874 151 1.509259 2.27898109 Emiliania huxleyi CCMP1516 280463 Haptophyta other_Eukaryota 43.9 0.00409   NR XP_005766366.1 280463 g9744 i0 74.1 1.09271523178808 27 7 53.6 0 142 62 220 246 XP_005766366.1 hypothetical protein EMIHUDRAFT_459485 [Emiliania huxleyi CCMP1516] diamond 165 43.9 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;