RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1074408", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA1074408 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27193759 27193759 PRJNA1074408_S_NODE_8682_length_160_cov_1.230769_g8552_i0 PRJNA1074408 8682 160 1.230769 1.9692304 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 72.4 5.25e-14   NR XP_004333244.1 1257118 g8552 i0 60.4 0.99375 53 21 99.4 0 1 159 124 176 XP_004333244.1 MAPEG family protein [Acanthamoeba castellanii str. Neff] diamond 159 72.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28362224 28362224 PRJNA1074408_S_NODE_6546_length_182_cov_1.381295_g6416_i0 PRJNA1074408 6546 182 1.381295 2.5139569 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 80.5 4.01e-16   NR XP_004356622.1 1257118 g6416 i0 76.6 1.64835164835165 47 11 77.5 0 19 159 269 315 XP_004356622.1 mitochondrial phosphate transporter, putative [Acanthamoeba castellanii str. Neff] diamond 300 80.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28741182 28741182 PRJNA1074408_S_NODE_7147_length_175_cov_1.454545_g7017_i0 PRJNA1074408 7147 175 1.454545 2.54545375 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 60.1 4.43e-9   NR XP_004349662.1 1257118 g7017 i0 63.3 0.84 49 18 84 0 168 22 139 187 XP_004349662.1 ribosomal protein L13, putative [Acanthamoeba castellanii str. Neff] diamond 147 60.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;