RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1074407" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1074407 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6566121 6566121 PRJNA1074407_P_NODE_107366_length_324_cov_1.007968_g103528_i0 PRJNA1074407 107366 324 1.007968 3.26581632 Nitrospira sp. 70125 Bacteria Bacteria 544 4.12e-150   NTclustered gi|2511640680|gb|CP126121.1| 70125 g103528 i0 96.914 179.364197530864 324 10 100 0 1 324 201861 201538 MAG: Nitrospira sp. isolate bin_001 chromosome, complete genome blastn 58114 544 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
21865119 21865119 PRJNA1074407_P_NODE_115038_length_301_cov_1.000000_g111200_i0 PRJNA1074407 115038 301 1 3.01 Nitrospira sp. 70125 Bacteria Bacteria 551 2.2699999999999992e-152   NTclustered gi|2290907019|gb|CP060499.1| 70125 g111200 i0 99.668 154.671096345515 301 1 100 0 1 301 2683943 2684243 MAG: Nitrospira sp. isolate DH1 chromosome, complete genome blastn 46556 551 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;