RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1074407" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1074407 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26940765 26940765 PRJNA1074407_P_NODE_136782_length_248_cov_0.868571_g132944_i0 PRJNA1074407 136782 248 0.868571 2.15405608 Myxococcota bacterium 2818507 Bacteria Bacteria 42 0.0279   NR MES2638698.1 2818507 g132944 i0 42 0.604838709677419 50 29 60.5 0 22 171 66 115 MES2638698.1 hypothetical protein [Myxococcota bacterium] diamond 150 42 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
28290501 28290501 PRJNA1074407_P_NODE_121626_length_283_cov_1.342857_g117788_i0 PRJNA1074407 121626 283 1.342857 3.80028531 Pseudomonadati 3379134 Bacteria Bacteria 46.2 0.00346   NR MBX5483269.1 2484252 g117788 i0 38.6 2.5017667844523 70 40 71 1 237 37 73 142 MBX5483269.1 efflux RND transporter periplasmic adaptor subunit [Myxococcaceae bacterium] diamond 708 46.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;